Mang037154.1
Basic Information
- Insect
- Molanna angustata
- Gene Symbol
- topi
- Assembly
- GCA_963576475.1
- Location
- OY754980.1:747795-753682[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.14 18 7.7 0.3 1 23 46 69 46 69 0.97 2 17 0.0067 0.87 11.9 0.4 1 23 106 128 106 128 0.97 3 17 0.0011 0.14 14.4 0.6 1 23 134 157 134 157 0.93 4 17 0.00052 0.067 15.4 1.5 1 23 201 223 201 223 0.98 5 17 7.4e-05 0.0095 18.0 1.8 1 23 229 252 229 252 0.96 6 17 8.3e-06 0.0011 21.0 0.9 1 23 258 280 258 280 0.99 7 17 1.4e-06 0.00019 23.4 3.5 1 23 286 308 286 308 0.97 8 17 0.0009 0.12 14.6 2.9 1 23 314 336 314 336 0.98 9 17 0.0019 0.24 13.6 0.2 3 23 344 364 342 364 0.97 10 17 5.2e-05 0.0067 18.5 8.8 1 23 370 393 370 393 0.96 11 17 0.14 18 7.7 0.5 1 23 448 471 448 471 0.91 12 17 0.024 3.2 10.1 2.8 3 23 598 619 596 619 0.94 13 17 3.7e-05 0.0048 19.0 0.4 1 23 625 647 625 647 0.96 14 17 0.00054 0.07 15.3 0.8 1 23 653 676 653 676 0.96 15 17 0.00034 0.044 15.9 2.0 1 23 682 704 682 704 0.98 16 17 4e-05 0.0052 18.9 3.2 1 23 710 732 710 732 0.96 17 17 7.2e-05 0.0093 18.0 1.0 1 23 738 761 738 761 0.95
Sequence Information
- Coding Sequence
- ATGCACGTTAATGAATGTCACCAATCTTTAAATACAGATGATGATGGTGAAGATTACCAACCTTTATCTAAATATGTAGATAGCTTGAACTGTAAAACATCTCCTAGTATCTCGATTGTCAATAAAGAAGACACATATCCTTGCACTAGATGCGTCTTTGTTGGGAGCACTGTTGAAGAGTTAAGGACTCACACACAAACTACACACAACAACTCCTCCAGCAATCTTTTTAAAAGGAGCAGTCGACGAGTATATGACGTACAAACGCGACGAGAATTAGAAAAatccaaaattaaaattaaaggaaAAACATATTACATATGCACCGTCTGCAATCAGAAATTGACCAGCGCTTATAGTTTTGTCGCACACAGAACAATTCATTCGGGACAGAAGATGTTCCTCTGTCTCGTATGCGGTCGAAGGTTTCGGTTACTCGGCTTCCTCAAGAACCACATGAAGCTCGTGCACTCTGGGAAGAGTAAAGATGTCAAAGTGGATGCGAACAACGacaaaaacaaatcaaaaactGTCGAAAGGAGACAACTCGACTGGAACACTTTGGACAGAGTCAAGGTATTTATCAACGGACAGACATTTTATAAATGTGAAATCTGCAACAAAAAGTTGACTCGAGTCAACTACTACATGAATCACATGACAATACATTCGGGTGAAAAGAAATTCATATGCCACCTGTGCGGGAAGAGGTTCCGGATATCTAACATGTTGCAGATCCATCTGCGTCTCACCCATGAGGGAGTCAAGAACTATTCCTGCGATGTGTGCAATCAGAAGTTTGGCACTAGCACCAACCTCATAGAGCATCGCAGAACGCACACTGGTGAAAGGCCCCACGTCTGTCCCAAGTGCGGCAAAAGATTTAAACAGAAATCTTCTCTGTTTGTTCATAACCGCAGCCACACGGATCATTTCCCCTTCCAGTGTGTCCATTGCCCCTCCAAGTTCAGGATACAGTCCCAGCTGAAGTATCACATGGCCAAGCACACGGGGGACACTCCGTATGGCTGCGATGTCTGCCTCAAGGCCTTTGCCACCGTCGGACAACTCAACAGACACAAGAAGAACCACGTGGAAGGACATCCCTTCCCCTGTTCGCACTGCGACAAGGCTTTTAGACACAAAAAGAACCTCAAAACACATTTGAAGAACTGCcacaatatacacacacaATTACTGCGTGGAAGATTTGCAGACATCACAGAAAGCTCAACAAAAGGCAAGAAACTTGCCTCACCTCTCAAGTCACTGACACTGACAGAATCACGCTTGAACCGTTTAAAACCCAAAGTGCCGGACCAAGAAAAGGAGATTAACACTCACATATGCTCTTTTTGTTCTCAACCTTTCAACGACTCTGACATACTCACAACACACTTATTAGACATTCACGctgatttattatttcattgcgACGTTTGCGGATCTTATTTGGACAGAAAGGAACTTATTCCACACATGTCTAAACATGCTGAACAATATGCACAAAAGGAAGTAAGTACAATCAAGAAAGAAGGCACCAAACCAACTgagaaaatcaacaataatactgTTGAATCTCCGTTACTAGTTAATGATGAAGCTTTTTCTACGTCCAGCCATTCAAACGATGGATTCGGTCCTCTGCCTGATTCTGTTTTTGAAGCTATAAAAGATACAGAGGACAATCACGATGTAGATAACTCCAAGGTTGTATCAGATAAAAATGATCAACAAAAGACAGAAGTGCAAGAGAAATCTGCCAAGAATACAGAAACAAACAGAATTATATGTCCCATTTGCTCCAAGGAGTTCAGACTGCCTTCCAGTTATCACTATCATAAGAAGCATTATCACGGGGGAGTGAAAGAGCACAGCTGTAATGTTTGTGGGAGAAACTTTGCCGTTAAAAGTGCTCTCACTGCTCATCTCACCCTCCATACTGGAACCAAACCATATTCCTGCCCGCAGTGTTCCAAAGAATTTCGCTCCAAAGCTAGTGTATatatacattacaaaaatatccaTTGTGAGAGTAAAAGGTTTACGTGTACAACATGCGACCGCTCCTTTAGATGGAAGCAGAAACTGTTGCGCCACATGGCTAGTCACACTAAAGAAAAGAAACACTTTTGTGAAAAATGCAACAAAGGATTCGGAGTCAAGTACGACCTCACACGACATATGAAGTCTCACGTGGACACAAAGAAATATATCTGTGACAAATGTAACACAGCCTTCTCCCAGCCTCGATATCTTAAGAACCACGTTGATAAAAAACACTCCACTACTCGAGTCAAACCAAACGACGATAAGACTTAA
- Protein Sequence
- MHVNECHQSLNTDDDGEDYQPLSKYVDSLNCKTSPSISIVNKEDTYPCTRCVFVGSTVEELRTHTQTTHNNSSSNLFKRSSRRVYDVQTRRELEKSKIKIKGKTYYICTVCNQKLTSAYSFVAHRTIHSGQKMFLCLVCGRRFRLLGFLKNHMKLVHSGKSKDVKVDANNDKNKSKTVERRQLDWNTLDRVKVFINGQTFYKCEICNKKLTRVNYYMNHMTIHSGEKKFICHLCGKRFRISNMLQIHLRLTHEGVKNYSCDVCNQKFGTSTNLIEHRRTHTGERPHVCPKCGKRFKQKSSLFVHNRSHTDHFPFQCVHCPSKFRIQSQLKYHMAKHTGDTPYGCDVCLKAFATVGQLNRHKKNHVEGHPFPCSHCDKAFRHKKNLKTHLKNCHNIHTQLLRGRFADITESSTKGKKLASPLKSLTLTESRLNRLKPKVPDQEKEINTHICSFCSQPFNDSDILTTHLLDIHADLLFHCDVCGSYLDRKELIPHMSKHAEQYAQKEVSTIKKEGTKPTEKINNNTVESPLLVNDEAFSTSSHSNDGFGPLPDSVFEAIKDTEDNHDVDNSKVVSDKNDQQKTEVQEKSAKNTETNRIICPICSKEFRLPSSYHYHKKHYHGGVKEHSCNVCGRNFAVKSALTAHLTLHTGTKPYSCPQCSKEFRSKASVYIHYKNIHCESKRFTCTTCDRSFRWKQKLLRHMASHTKEKKHFCEKCNKGFGVKYDLTRHMKSHVDTKKYICDKCNTAFSQPRYLKNHVDKKHSTTRVKPNDDKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -