Mang043832.1
Basic Information
- Insect
- Molanna angustata
- Gene Symbol
- -
- Assembly
- GCA_963576475.1
- Location
- OY754983.1:11968003-11982056[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.00085 0.11 14.7 0.4 1 23 140 162 140 162 0.95 2 20 0.0006 0.077 15.2 3.0 1 23 168 190 168 190 0.98 3 20 1.6e-05 0.002 20.1 0.9 1 23 196 218 196 218 0.96 4 20 0.0018 0.23 13.6 0.9 1 23 224 246 224 246 0.96 5 20 0.19 24 7.3 3.1 1 23 252 274 252 274 0.97 6 20 5.7e-05 0.0073 18.4 6.7 1 23 280 302 280 302 0.98 7 20 2.8e-05 0.0036 19.3 1.6 1 23 308 330 308 330 0.98 8 20 0.00015 0.02 17.0 0.5 3 23 338 358 336 358 0.97 9 20 0.0026 0.34 13.1 3.8 1 23 364 386 364 386 0.98 10 20 0.0051 0.66 12.2 0.1 1 21 494 514 494 515 0.91 11 20 8.8e-06 0.0011 20.9 3.1 1 23 540 562 540 562 0.98 12 20 0.012 1.6 11.0 0.3 2 23 687 709 686 709 0.92 13 20 0.00022 0.029 16.5 1.6 2 23 717 739 716 739 0.96 14 20 0.00032 0.041 16.0 0.6 1 19 771 789 771 791 0.95 15 20 0.012 1.6 11.0 0.5 1 23 817 839 817 839 0.93 16 20 0.00037 0.048 15.8 1.1 1 23 845 867 845 867 0.98 17 20 4.2e-07 5.5e-05 25.1 1.5 1 23 873 895 873 895 0.96 18 20 0.0026 0.33 13.2 4.8 1 23 901 923 901 923 0.99 19 20 0.00063 0.081 15.1 0.4 1 23 929 951 929 951 0.97 20 20 0.04 5.2 9.4 1.1 1 23 957 979 957 979 0.97
Sequence Information
- Coding Sequence
- ATGAGTTCGGACAGTGAAGATAATTTACTCTGTTCAATTAGTAAtgacttaaacaaaaacaaaatagtttCAACAGAATTTACGTCTTCAGTATTTGAAGTTCCAATTTTGACTTCCACCATTGATACGCTAATAAAAGAAGAAATCACAAATAACTCTGAAGATGAAGAAAAACAAATTGTTGGCCAAAATAGTGCATTCATACCTTCAAACAATTTGATCGATACTTTTGTCAATGTTAATGATGATCCACCAGATCAAATCATTATCAAAAGTGAAATTCCTAGTGACAACGAAACTGAGCAAAATTTTAGCCATAACCTTGTCTTCCAGGATTTCGGAAGTCTATTGGGAAATTTAGCAGTTTCTGAAAATATTAAGAATGTCAAGAAAAACAGAAAAGGGAACAAAAAAGAGTACAAATGTGATGTTTGTTTAAACACTTTTGTTAATGCTTCTCTCTTGAAAAGGCATAGCATCAATCACTCAACAGAAAAGCCTTACAAGTGTGATATTTGTTCTTTTTCGTGCAAACTACCTTCAAATCTTAAGTCACACAAACAAATCCATAACACAGAACGTCCATTTGTTTGTGATGTGTGCTCAAGAACATTCACTCAAGCCGTAAACTTAAAGAAACACAAGGTTAGACATTCAGGAATTAAGCCATATGCATGCAGTTTGTGTCCATCTACGTTTTTCTCACTTTCTAACTTGAAAGCGCACAAATATTCCCACACGGATCAGAAACCTTTTGCCTGTGATGAATGTCCATACTCGTCCAACAAGTTTTGCACTTTAAAATCACACAAGTTAACTCATACAGGTGAACGACCATTTCAGTGTGATGTGTGTAAGAAGTGTTTTTCTCAAACGTCTCACTTAAGAACACATAAACTTATACATTTAGAAAAACGGCAGTATGCTTGTGATGAATGTTCTGCCACTTTTGTTCAATCTTCTCACCTAAATACTCATAAACAAACGCACACTGGCCTGAAACCATTTGGATGTGATATTTGTTCCCTCACATTTTCTCGCATATCCAATTTGAAAGCCCATAAACTGAGTCATTTGGATCAGAAGCCTTTCCAATGTGACCTTTGTTCATACACATGCAGTCGTCCAAATTACTTGCGTTCTCATAAGCTAAGCCATGCAGGACAGAACAATGACCCACTGGATGTAATAAATCCTGCCATTTTGACCATTGAATTTCTGTCAGACACTATCGAGAAGATAATCCAGCTCCTACAGAAAGTTATAGTGAGAGATACAGACAGACCACGGGCGGAAAAAGTAAAGATGGGTGTATTGAATGCTATTTCCTGTTATCAAGAGATGATTGACGGTCatcaaaaacaatttttgtttGTCGATGTAGAGTCACCGGAGAGCACACCGACGAATGAAGTGAACGAACCtaaaaatgaaacattaaaagaCAATTCAGAATCAAAACTAAAGGAAGTGGTTCGATATACATGCCAAGAATGCGACATATCCTTTACGGATCCCATGTACCTGGACGGACACTGGAAACAGTGTAAGGGTCGAAGAATCCGCACCTGGGGAGTCCAGCCAGACACGGATGCTGTTCAGAACCAAGATGGCAGATTTCAATGTCCTATGTGCCCCTGCACATACAACAACAAATACAATCTGAAGAGGCACATTGTTAAgcataaatTTTACCAAATACAAAACGatacaaataaaatgaacacaCTTATATCTGCCAGAAAAGATCCATCACTTGATGAAAATGACACATTGAATGCAGTTTCTAGTACTAATATAGGTGAAGAAAATTATGATGCAATGCAATCCATCAACAGCAATGGCAATGAAATTTCATTGAATGACTTGTCAAAAATGTGTGAAGTGAATGATGTATTGGATGGAACTCAAGATTTAATTATGGACACAAACAATGACAAGTCTATGGTTACGTCTAACATAATTGGGGGCAGCACATCAAAGGATTGCCTTAAATACAGCCTTTCCCGCGTACTGAGCGATGTTCCCGCTTCTGAAGAAATACTTGAGGAAAAGGTGCAGTGCGATCAATGTGACAGATCGTATAAAACTAGAAACGCATTAGCTTTCCACATACAGTATGTTCATAAGGACGAGGGTTACGCTATTGTTTGTAACCACTGTCCAACTATGTTCAAAAAGGCATACTATTTGACGATACATGTCAAACGTAAACACGGAGTAACTATGAGCGAAGGTCACAATTATTATATGGCCTCTTCTAAAGAGCTGAAGAAGTATACAGTTCCGAAGGTAATTGAATTGAGAGTGTTCATGTGCAAACTGTGCTCAAAGATATTTCCTACTCCCAAACAACTCAAGCGCCACAATCAAGGAAATTGCATGGGTAATAAAAGAACTGTTCCATGGCCACAAACTCCAAGAGGATTCAAAAAAATTGaaggaaaatatatttgtaagATATGTGGGAAGGTTTATGGGAGTTACGGGGGCATCCATCGTCACACAGTGTATCACAATGGCGAAAAACCATTTGAATGTGATATATGCGGTCAACGTTTATCCACCAAAGTAGGCCTCCATCTTCACACAAAAACTCATTCGCAGACTAAAGAATACATTTGTGACGAGTGTGGAAAAACTTTTTCCCATCCAAGTAACATGAAACGCCACAAGATGGCGCACGCTGGACACAAACCATATAAATGTGAAGTATGCGGAAAACAATTTCAATTTGTATGCCATGCCAAAGTCCACATGAGAACGCACACTGGCGAAAAACCATACGATTGCGACATGTGCCCTCAAAAGTTCAGTGATCGTAGAGGATTTTTAGCGCatgtaaataaacataaagGAATCAAACCATACAAATGCAATCAATGTGATTCAGCATTTCTTCTCAAGAAGTCTCTTAATAAACACTTGTTAGAGCATACTGATAATAGAACTAATTATTGTTAA
- Protein Sequence
- MSSDSEDNLLCSISNDLNKNKIVSTEFTSSVFEVPILTSTIDTLIKEEITNNSEDEEKQIVGQNSAFIPSNNLIDTFVNVNDDPPDQIIIKSEIPSDNETEQNFSHNLVFQDFGSLLGNLAVSENIKNVKKNRKGNKKEYKCDVCLNTFVNASLLKRHSINHSTEKPYKCDICSFSCKLPSNLKSHKQIHNTERPFVCDVCSRTFTQAVNLKKHKVRHSGIKPYACSLCPSTFFSLSNLKAHKYSHTDQKPFACDECPYSSNKFCTLKSHKLTHTGERPFQCDVCKKCFSQTSHLRTHKLIHLEKRQYACDECSATFVQSSHLNTHKQTHTGLKPFGCDICSLTFSRISNLKAHKLSHLDQKPFQCDLCSYTCSRPNYLRSHKLSHAGQNNDPLDVINPAILTIEFLSDTIEKIIQLLQKVIVRDTDRPRAEKVKMGVLNAISCYQEMIDGHQKQFLFVDVESPESTPTNEVNEPKNETLKDNSESKLKEVVRYTCQECDISFTDPMYLDGHWKQCKGRRIRTWGVQPDTDAVQNQDGRFQCPMCPCTYNNKYNLKRHIVKHKFYQIQNDTNKMNTLISARKDPSLDENDTLNAVSSTNIGEENYDAMQSINSNGNEISLNDLSKMCEVNDVLDGTQDLIMDTNNDKSMVTSNIIGGSTSKDCLKYSLSRVLSDVPASEEILEEKVQCDQCDRSYKTRNALAFHIQYVHKDEGYAIVCNHCPTMFKKAYYLTIHVKRKHGVTMSEGHNYYMASSKELKKYTVPKVIELRVFMCKLCSKIFPTPKQLKRHNQGNCMGNKRTVPWPQTPRGFKKIEGKYICKICGKVYGSYGGIHRHTVYHNGEKPFECDICGQRLSTKVGLHLHTKTHSQTKEYICDECGKTFSHPSNMKRHKMAHAGHKPYKCEVCGKQFQFVCHAKVHMRTHTGEKPYDCDMCPQKFSDRRGFLAHVNKHKGIKPYKCNQCDSAFLLKKSLNKHLLEHTDNRTNYC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -