Mang043016.1
Basic Information
- Insect
- Molanna angustata
- Gene Symbol
- -
- Assembly
- GCA_963576475.1
- Location
- OY754983.1:2033568-2059442[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.02 2.5 10.4 0.2 2 22 243 263 242 263 0.92 2 17 4.7e-05 0.0061 18.6 0.2 2 23 300 321 299 321 0.94 3 17 0.0019 0.24 13.6 1.6 1 19 327 345 327 349 0.94 4 17 1.2e-06 0.00016 23.6 1.4 1 23 355 377 355 377 0.96 5 17 6.4e-06 0.00083 21.4 0.4 1 23 383 405 383 405 0.97 6 17 0.074 9.6 8.6 2.2 2 21 411 430 411 432 0.93 7 17 3.5e-06 0.00045 22.2 1.5 1 23 438 460 438 460 0.97 8 17 4.2e-05 0.0054 18.8 0.5 1 20 466 485 466 488 0.94 9 17 0.0002 0.026 16.6 0.4 1 23 494 516 494 516 0.97 10 17 7.6e-06 0.00098 21.1 2.0 1 23 522 544 522 544 0.96 11 17 1.5e-05 0.002 20.2 0.1 1 23 550 572 550 572 0.98 12 17 5e-05 0.0064 18.6 0.2 3 23 580 600 578 600 0.98 13 17 1.2e-06 0.00015 23.7 0.2 1 23 606 628 606 628 0.95 14 17 3.2e-06 0.00042 22.3 0.5 1 23 634 656 634 656 0.99 15 17 4.7e-06 0.0006 21.8 1.4 1 23 662 684 662 684 0.98 16 17 0.036 4.6 9.6 0.2 1 23 690 712 690 712 0.97 17 17 0.0043 0.56 12.5 3.8 1 23 718 740 718 740 0.98
Sequence Information
- Coding Sequence
- ATGGCGGAAGGCGTCTCTGTCGATGTTATAGTAAAAGATGATATTTCCGATCGATTCTCTCTCGAATTATGTGATAATATGTCCGAATCTAGATTCTGTCGTGTTTGCTTGTCGAGCGGTAACAACACAACCTGGtTGTCCGATGGTCCGGATATGAGTTGGTTGTGCTGCCGATGTGCTCACACCATGAAGAAGCTGTCTTCCTTCCGGGATCTCTGCACCAGAACCGATAATGTCCTCAGAATGTTCTACACGACAAATCCCTTACAAAAAATAGACTTGGAATATATACAGAGGGAACGAAAGGTCATGCTTCCTATCGACGAACCGTCCTTTTCCAACACTCTATGCATAGATGTCTCTACGATGGACAGTTCTTTAGAGGCAGATAGTCGAGTAAGCGTTGTGTCGTATACTTATGGACGAACTCATTCCAAAGTTCTCCATTGTAACTACTCAGAGGACATGACCGACCGCATCAAGACGGAAGCATCCGACGTGGAGGGGAAGTACGAAGGAGATATGGAGTTTGACTGCTACGATTCGGAAGGTCGGGCCAGCGATGGGGCCTTTGAAATTCTGATTGTCAAGGATATGGACCTTGTGGAGCCAAAGGTCGAGAGGGAGATGTCACCGGTCGACGTCAAGTTGGAGGGGGGTATCGATAAAGTTGGCAACGAGAGGAAGGCCGATAGTTTTAAGGAAGAACAAGACGAGTGTTGGCTCAAGTGTAAATATTGCAACAATGATTTTCCAGATCCTGCGTTACTTTCACAACATTCaaagACTTGCAATTTAAGAAGACAGTTGAAGAGACGTCGGGGCAAAACGCTAGACAAGGTGAAGGCGGCATTGGACGCCAGGAAAGCCAAACGAAAGGGGCGAGGGTCTCGCTTGGAATGTCGTCACTGCGGCAAAGTCTTCAAGATACCGAGCGAGTTGGCTCGCCACGCCGTCATGCACACAAACGACAAACCTCACGCGTGCGACAAATGTgacagGCGATTCAAGTTGTCGTCGCAGCTCCGCTCGCACTCGTGGGTCCACTGCGAGCGTCGCCCCCATGCGTGCTCGATATGCGGGCGCACGTTCCCCCACCCCTCGTACCTGCGTATACACCAGCGCGCCCACACGGGCGAGAGGCCCCACTCGTGCAACGAGTGCGGCGCCGCCTTCAGGACGGTCAGCAACCTCAACTCGCACGCCAGGATACACGGGGATCTCAAACCGACGTGCACCATCTGCGGAACCAGATTTCAGAGTGGAAATCAACTGAAGGAACATGCCAGATGTCACACAAGTGAGGGTCCCTACACATGTCAGGTCTGCGGTAAGATGTTTCAACATCCAAGCTATTTGAAACGCCATGGGTTAGTCCACTCTCATGTCAAGTCCTTCTCCTGCGACCAGTGTGGGAAGGCATTCAAGCGGGAGACGGAGCTCAAAGCGCATAAGTGGATACACACCGACAGAAAACCATATGTTTGTGACGAATGCGGACTGTCTTTCCAATACGAATCATACTTAAAGCTTCATAAGATGGGACATACAGGTGAGAAGCCACACTCCTGTGACCAATGCGGGAAGGCATTTAAAACAGTTAGCAATCTGAATGCACACAAGACTAGACACAGTGGACTAAAGCTCTTCAAATGCGAGGTCTGCGGCAAGTCCATTAAAAGCGCTGGACAACTTAAAGAGCACTTATTAATCCACACAGGCGAAAGGCCATTTGGTTGTGACGTATGCGGAAAAGCGTTTCGGCGCGGCGTAACCCTCAAAATACATCGGCGCATACACACCGGAGAGAAACCGTTCCTCTGCAGGGAGTGTGGTAAAGCCTTCAGGCGTCAGGGAGAATTGATTGCTCACACCAGAGTGCACACAGGCGAAAAACCATACACTTGTGATGTATGCGGAAAGTCCTTCGCTAGTAACGGTACGTTCCTTTCGCACAAGCGTGTTCATACTGGAGAAAAACCGTATCACTGTACGGTATGCGGGAAATCTTTCACCGGTGCCAGTTATCTCAAAATCCACAATCGAATACACACCGGGGAAAAAAATTACGCATGTGACGCCTGCAGCTACCGGTGCATCAGTCTTGCAGCTCTCAAAGCGCATCGAATGATTCATACCGGGGAGAAGCCTTTCTCTTGTGACTTGTGCAGCTACAGATCTTCCACAGCCAAACATCTCAGAAACCACAAGTTGACACACAACAAGACTGCGTTCTTCTGA
- Protein Sequence
- MAEGVSVDVIVKDDISDRFSLELCDNMSESRFCRVCLSSGNNTTWLSDGPDMSWLCCRCAHTMKKLSSFRDLCTRTDNVLRMFYTTNPLQKIDLEYIQRERKVMLPIDEPSFSNTLCIDVSTMDSSLEADSRVSVVSYTYGRTHSKVLHCNYSEDMTDRIKTEASDVEGKYEGDMEFDCYDSEGRASDGAFEILIVKDMDLVEPKVEREMSPVDVKLEGGIDKVGNERKADSFKEEQDECWLKCKYCNNDFPDPALLSQHSKTCNLRRQLKRRRGKTLDKVKAALDARKAKRKGRGSRLECRHCGKVFKIPSELARHAVMHTNDKPHACDKCDRRFKLSSQLRSHSWVHCERRPHACSICGRTFPHPSYLRIHQRAHTGERPHSCNECGAAFRTVSNLNSHARIHGDLKPTCTICGTRFQSGNQLKEHARCHTSEGPYTCQVCGKMFQHPSYLKRHGLVHSHVKSFSCDQCGKAFKRETELKAHKWIHTDRKPYVCDECGLSFQYESYLKLHKMGHTGEKPHSCDQCGKAFKTVSNLNAHKTRHSGLKLFKCEVCGKSIKSAGQLKEHLLIHTGERPFGCDVCGKAFRRGVTLKIHRRIHTGEKPFLCRECGKAFRRQGELIAHTRVHTGEKPYTCDVCGKSFASNGTFLSHKRVHTGEKPYHCTVCGKSFTGASYLKIHNRIHTGEKNYACDACSYRCISLAALKAHRMIHTGEKPFSCDLCSYRSSTAKHLRNHKLTHNKTAFF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -