Mang042990.1
Basic Information
- Insect
- Molanna angustata
- Gene Symbol
- -
- Assembly
- GCA_963576475.1
- Location
- OY754983.1:1739424-1749794[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.18 24 7.3 0.1 1 21 157 177 157 178 0.93 2 23 0.0009 0.12 14.6 4.9 1 23 222 244 222 244 0.96 3 23 0.0024 0.31 13.3 1.3 2 23 251 273 250 273 0.94 4 23 0.096 12 8.2 0.3 1 23 277 299 277 299 0.92 5 23 0.003 0.38 13.0 0.1 2 23 302 323 301 323 0.96 6 23 1.8e-05 0.0023 20.0 0.3 2 23 329 351 328 351 0.97 7 23 0.042 5.4 9.3 0.4 2 23 358 379 358 379 0.97 8 23 7.6e-05 0.0098 18.0 1.4 2 23 389 411 388 411 0.94 9 23 5.7e-05 0.0073 18.4 3.0 1 23 417 439 417 439 0.98 10 23 0.47 61 6.0 2.4 2 23 448 470 447 470 0.93 11 23 0.0012 0.15 14.2 0.9 1 23 476 498 476 498 0.97 12 23 6.8e-05 0.0088 18.1 0.3 2 21 505 524 504 525 0.94 13 23 5.8e-06 0.00076 21.5 1.3 1 23 532 554 532 554 0.99 14 23 0.00069 0.089 15.0 0.7 5 23 564 582 562 582 0.95 15 23 0.00039 0.05 15.7 0.1 1 23 588 610 588 610 0.98 16 23 0.00032 0.041 16.0 0.8 1 23 628 650 628 650 0.98 17 23 0.00019 0.025 16.7 1.1 1 23 656 678 656 678 0.96 18 23 9.2e-06 0.0012 20.9 3.9 1 23 684 706 684 706 0.98 19 23 1.1e-05 0.0014 20.7 1.8 1 23 712 734 712 734 0.99 20 23 2.3e-06 0.0003 22.7 0.7 1 23 740 762 740 762 0.98 21 23 2.5e-05 0.0032 19.5 0.8 1 23 768 790 768 790 0.97 22 23 4.1e-06 0.00053 22.0 0.7 1 23 796 818 796 818 0.98 23 23 0.00084 0.11 14.7 1.1 1 23 851 873 851 873 0.98
Sequence Information
- Coding Sequence
- ATGAAGAGGTTGTCCTCATTCTGTGAACTCACCACTAAATCTGACTGTGTACTGAAGGAATTCTGTGCAAAATACAAGGAAATCGGAGAGtttgCAGTAGATTACTTAAAAGAAGAAAGTAAAAAGCTATCGAGGATGTATGAAGACTCTTATTTTAATGCAGTTTGTTCTTGCGGAGCATCCAGTTTGAGAGATTTAGACAACCAAATTCCATTGTTTTCATTTGCCTCAAAAGAGCTTAATCCCCTTTCGGGAACTGAAATCGACTTGCAAAAGAATTATGAATCAGTAATGGCAATCAAGGAGGAATCGCCCGAAAGAGATTTTATCAATGAAAACCGTCATTTTTTCAAAGTCATCGATGGTGGAACTAAACATAATATCGAAAATCCCATAGATTTTGATCTAGAATTGGAAATAGGCCAAAGAAAAACTGACAATgACTACATAAATGATTTTGACTGCATGTACAGTTGTAAAGTTTGCAAGATACAATTAAGTAATCCCTCTGCGCTTCCTAAGCATTATAAGGCATGCGTGCAGCTATCAAAATTACCAACAAACGAGGATCTAAGTGGCAAAGAAGAAATTGACAATTCGTCGGATGCCTTCTTCGAATTGAAATTGGAAAAGATGGAAAGTGACGCAGAAGATGAAGATTCTTTTGACTGCCAAGAGTGTCACAGGTCATTTGAAAACTTAAAAGCTTTAAAAAAACACCTTTCTCACCACAAAAAGGGGTGTTTGGTTCCATGTGAGTTTTGTAACAAGAAGTTTAAAAAGGGATCAGACTTAGAAACACATAAAAGCAAATATCATAGAGAAAAATTTCAGTGTATAGAATGTAATGTTACCTTTTCTTCGTTACAAAAATTAGAATCACACTCTATCGAACATAATTTAATGTGCGATATATGCATGATGGTTTTTTCTGATAAAGAACAACTAGCAGAACATACGCAGATGCATACTGAAGTCCTTAAAAGTTGCGACATCTGTGGTGAAGCTTTCAACAGGTTGAGTGTTttgaaaaatcatataaaaactCTTCATTCTGTTATGAAAACTCCTACTTGTTCGATTTGTAATGATACCTTTGAAACTGTTGTTGAGTTAAAATTGCATAAGAAAATTCacagaaataaagaaaaatatggtGGAAACAAATGCAAGGTTTGCAGTAAAACATTCTCCAGAGCACGGACTGTCAAAAAGCACATGGAAGAAGTTCATTCCAAGCGAAAACCTCACAAGTGCAGCACATGCGAATTATCTTTTAAATCTATCAGTGATTTGAAAGTACATACAAGAACACATGGAGTGATCGAAAGAAAAGAATGTAATTGCGAAGACTGCGGAGCCATTTTTCATGCTCCTTGTGCACTGAAATTGCACAGACAATTAGACCATAATAGTATGAACAATTACTCTTGTTCACAGTGTAAAAAGTTGTTCTATTCGGAAGCTCAATTAAAAGTACATACCATGGGTCATGAGGGAATGAAAGTTGTTAAATGTGAGGACTGCGGTTTGGAATTCAAACAAAACTACTTGTTGAAGCATCACATTTTACTTTATGTTGAAGATAAACCGTTCAAGTGTGACGTTTGCGGAAAGGGATTTAGTACTTTATCAAGCTTTAAAGGCCATAAGAATACCCATTCTGGCGAGCGACCgtttggatgtatagaatgcGGAAAAACTTTTGGTACAAAGAGCCAGTATAATGTTCACAAAAAGATTCATATGAAAGATCAATGTTACCCTTGCAGTTTATGCAGTGAAGCATTTCAGTCACAGGAACAACTATTACAGCATATAAGTGTACATTCCGATGGAAAGCATATTGTGATGCCATATCAGATAGATACCAAACATTCCTTCATGTGCTCTGAGTGTCGGGCAACATTCAAAACTGAAAATGGTCTTAAGGTGCATCAGCTGAAGCATTTAGGAAAAGTTCCTTTTTCTTGTAaggaatgtaataaaaaatttcTCACAGCGGCCAATCTAAGAAAGCATCGCGTAGTCCACACAGATATTAAAGATCATAAATGCAACGAGTGTGGTCATGCATTCCGGACTCAGAATAGACTCGAACAGCATATGAGAATTCATACAGGAGAAAGACCGTACAAGTGTGAAGTATGTGGAAAAGCTTTTAGGACTACAGAAAGatttagGACCCATCGTCGAATTCATAGCGGCATTCGTCCGTTTCCGTGTCGTGTCTGTGGTAAACGTTTTAATACCAGTAGCAGCCTTCTAATCCATAAGCGAATCCACACCGGTGAACGCCCCCACGTGTGCTCTATATGCTCACGAACATTCATCCGCAACAGCGATCTCGTTATACATTCGAGGATACACTCTGGCGAAAAACCATTCACTTGTGAAGTGTGCGGAATGAGCTTCAGCGTCAATGGCAGTCTCAAAAAACACAAGCGTCTTCATACTGGTGATACATTCCCTTGCGATCTATGCTCATACAGAGGCGTCACAATGGCAATTGTCAGAACACATCGCATGACACATACTGGAGAGCGACCATATGCTTGTGACATGTGCAGTTTTAGAGCAATCAGTTCCAGTAGACTTAAAAAACACATGAGAACTCATAAAAAACTACACTCCATTGAAAATGGTCAATTTTAG
- Protein Sequence
- MKRLSSFCELTTKSDCVLKEFCAKYKEIGEFAVDYLKEESKKLSRMYEDSYFNAVCSCGASSLRDLDNQIPLFSFASKELNPLSGTEIDLQKNYESVMAIKEESPERDFINENRHFFKVIDGGTKHNIENPIDFDLELEIGQRKTDNDYINDFDCMYSCKVCKIQLSNPSALPKHYKACVQLSKLPTNEDLSGKEEIDNSSDAFFELKLEKMESDAEDEDSFDCQECHRSFENLKALKKHLSHHKKGCLVPCEFCNKKFKKGSDLETHKSKYHREKFQCIECNVTFSSLQKLESHSIEHNLMCDICMMVFSDKEQLAEHTQMHTEVLKSCDICGEAFNRLSVLKNHIKTLHSVMKTPTCSICNDTFETVVELKLHKKIHRNKEKYGGNKCKVCSKTFSRARTVKKHMEEVHSKRKPHKCSTCELSFKSISDLKVHTRTHGVIERKECNCEDCGAIFHAPCALKLHRQLDHNSMNNYSCSQCKKLFYSEAQLKVHTMGHEGMKVVKCEDCGLEFKQNYLLKHHILLYVEDKPFKCDVCGKGFSTLSSFKGHKNTHSGERPFGCIECGKTFGTKSQYNVHKKIHMKDQCYPCSLCSEAFQSQEQLLQHISVHSDGKHIVMPYQIDTKHSFMCSECRATFKTENGLKVHQLKHLGKVPFSCKECNKKFLTAANLRKHRVVHTDIKDHKCNECGHAFRTQNRLEQHMRIHTGERPYKCEVCGKAFRTTERFRTHRRIHSGIRPFPCRVCGKRFNTSSSLLIHKRIHTGERPHVCSICSRTFIRNSDLVIHSRIHSGEKPFTCEVCGMSFSVNGSLKKHKRLHTGDTFPCDLCSYRGVTMAIVRTHRMTHTGERPYACDMCSFRAISSSRLKKHMRTHKKLHSIENGQF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -