Basic Information

Gene Symbol
JARID2
Assembly
GCA_963576475.1
Location
OY754966.1:33359012-33411743[+]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 6.1e-20 4.1e-16 60.8 0.1 5 89 1553 1635 1549 1635 0.92

Sequence Information

Coding Sequence
ATGACCCCAAAATTTGCGTTCTGCGAGACGACGCAATTATTCAAGATGTTTGTCGTTGATGAGATGGGAGTCCCTAAGCATCTTATACATATCCTAAAAAACTTGTATGCAAATAGTTCTGCCTCAATAAGATTAAATAATGCCTTGTCCGCTGCCTTCTCAGTCCAGAAGGGTGTCCGCCAGGGATGTATACTGTCCCCTGCTCTCTTTAACATCTACGGAGAGTATATAATGAGGAAAGCTCTGGATGGTTGGGAGGCCGGATTCAGCATTGGTGGCAAGAAAATCTCCAACTTACGCTTTGCAGACGACACAACTCTGGTAGCCACAAACGAGACCGATATGAAACAACTCTTGGATCGTGCTGAGAGGGAAAGTCTATCACTCGATCAAGATGAAAACATCTACAGTGAAAAGAAAGAAAGATGTCCATATTCCTTTGGACACAAAGCGCATTGTCTTTATGTGACTGCTGATTACAGAATTAAAGTACAGGCGCAAAGAAAGTTTGCACAGGGTGTGCCTGTGATACCAGTCCAAACACCCAAGGATAACCAAACTCCATCCACATCTCAGGAGCCTCCCACCGAGACAGTTTTCCAACTAGACTCCAATAACAAACCCTACACTGAGGACTTTCTCACATATCTTTGCTTCAAAGTATTTATACCTTACGGAGTGAGAAAACAAGCATCGCAGTTACCTGCACTGGCTCCACCACCAGACGAAGAAGACCTTGCAAGTAAGAGAAGAGCTTTGCAGGCTCTTAGCGCCAAATACCGTCTCGAAACACGAGCCAGACTTAGGGCAATTGCCTTTCGCAAAAGCGGAGATGCAGATAGGGTTCAAACAAGGTCTTCTAAAGTTTTAAAAGTGACGAAGGCAATTAAAAAGAAACGGCCTAATGGGCTTacagaaaattataaattagttgATCGTAGAGTTGAGAACAAGATCCTCGAAAATTCTAAAATTATTCCAGAAACTACTGAATTGACTCTGAAAAAATCTCCTACTAATGAAGATATTGAAAAGAAACAAATCCAACCAAAGAAGAACGAAAGGAGTGAAAAGGGCATTCTTAAAACTGCTTCAGTCAGAGAACCTATGAAAACAAGAAGTTCAAGAccatcaaaaattataaataagtcaACCAAAAATACTTCCGTTGATTCCAAAAGCAAAACCCTTATCAGAAAGCACTATAGAACAAGAAACAATACTCAAATCAAGTATATTACAAAGACATCTGATGGAACTACTCTTTGTAAAACTCGTTCTGGTGCAATTCGTCGTTTAAAAGTTCCCGCCAAAAAGAAAAACCccataaatgtaaagaaaaatgaaattattgacaaaaatataaaagaaaatgaagatGTTAACAAGAATACTAAAGAAACCACACTTAAAACTTTAGAATTTTCATCAGATGATGATGAGCCTCTATATAAAACACTTGAGGTCAAATCTTCTGCCAGTACATCTAAAGATCTTAATACATCTAAAACTGATGTTACTGAAAAAGTTCATTTTACTCGCCACAGTAAAGTCCATGATAGTTCTGAAAAGTCACCAGATAAATctcaaattaaaatcaaacctacACCAGAAAAAATGAAAGTTCCAAAGAAAATTCCAACTGAAAAGGAAAATATAAAGTCTGATGAAAATTATAACAAGAAATCCAAAACATCTCCAGAAAATGCCAAAGTGAAAAAGGTAACAACATCTgataagaaaattaataaaaaaaataacacacccattaaaaaaatacccagTGAAAATTTACTggaaaaaagtaaattaaacaaTGCATTGAAATCTAAAAATGATGATAAACACAAGCCAGCAAACGAACCATTATCACCCAATGTTGGTAGAACAACCCGCCATAAAGTTTATTCACCGCCATTAAACTCAAAAgttattaatgaaaaattttccacaaaaaataacgaagaaaaaccttccacaaaaataattgaagaaaGATCTCTAACCAAAGTTAGTGATGAAAAACCAATAGCAAAAATTGTAGACGAAAAATCTCCATCAAAAATTAACAATGATAAACCTCCAACAAAAATCCTatcagcaaaaaataaaaatgaaaaaacctTAAAGAATAATGATGAAATTATAGAAAAAGTTGGCAAACGAGTTTTTGATAAGTCTGGCAATGAAAATCCAGATAAAGCTGTACAAGGTATATCCAAACAAATAATTGAATTGCCAGAAGTATTTGTCAAAGTTGAATTAAAGAACAATAATAAGAAACCTGAAAAAACTGTTAtacaaaaaatggaaaaaaacgATTGCCAAAAAATGGAGGTAGAGGATATTGAAAATGAAAAGATGAAGCAGGAAGAATCCAAagaattttacataaaaaaaaatactacaacCCAAATCAAAAAGGTTTCCAAAAAACGAATTTCTGAATCACCAAAAGCAGATTCAGCAAAACCTAAAACTGAAAAGAAACCTGTGGAGAAACAAAATTCTGAAATAGAAACCAATACAATTAAAACTCGTTCTGGTTCTAAGCACACACAACATGCGGAAAATTTACAATGCATAACACGATCTCACAAGAACTCCAATGAATCAGGTGATACGATTATCAAAAGTAGTTTTCAAAAACAACATGAAAAAAGTTTCACAGATTCTGATGAAGAACCATTGGCATCGAAAATTTCTGATACTTTAAATAAGAGTACTTCTGCAAAAACTCCAATAAAAACCAGagctaaaaaatatacaaagaaaattCAAACAAAGAAAGCTACTCCAATATCAAACAAGCCTGAGTTGTCAATCTTAATTGATAATGAAACAAGGGAAATTGCCGACAATTTTGGAAAATCATTACTCAAAGAAAATCACCATGATTCTTCTCTGGTATTTGGTATCGGAAGTGATGATTCTTCAACTTCTTCAGATGATGAAAGTAATATTACAAGTGATCAAGTTGAAAGACTTCCTAGATTCACTTCACAAAAAAGGGAGGGGTCACCGTCCTTAAACGGAAATCTTGAATCTAATGCTGAATTATTGGATGAGCTATTAAATTCTAATCAGTTTTATTGCAAAGATGGCGGGCGTAACAGAAAATTTATGAAATCGAAGGAATACATTGAAAGTTGGCTAATTGACAGTGCAAGACTTGCCACAGATAGTCCTTTAGCTGAACTTTTTACACCAATAaattcgtctttcaaaatttctgAATCTGAAACACCAGTTGAACCTGCTACTTCTGATTTTCCAAGCACAGCAGAGGTAGAAAAAGTTAATGTTGAGACACAATGTGGTGTTGAATTAGAACCCACTATATTGCAAGAAGAAACAGAAGAGAGATCTAAAGTAGATAACAGCAGATTAGAAGTAATTCCTCCTAATAGTGAAATGACTATAGCTGAGATTTTTGATGAGCTTTGTAGTCAACCTGATCTTTTAACAGCTGCCCAATCAACAATCAATGAACAACCagaattaaaaacaattgtCTCTCAATCTCAGCCGGCCGAAAATTCCCTCAATATTTATGAGTTTGAAAGTGATTCAGACACTTCACTTCAGGGTTTTAATATGAATGATGATATTAGTTGGAAACCAAAATCGTTGAGAGATTTACAGAAACCACGTAAACTAATTCCATTGTACATGGCTAAAAAACGTGGAACACTTAATAGTGGTATTGAAGACTCAACTTCTTTTCCTGATAAGTCATCATGTtctttttctaaaaaaacagaAGTTGAAAGTTCTAAACCTGTTTCTCCACAACCTCAAATTTCAAAGGAAATATCCGCTGTACCTCTTGCTTCTGTACCAGAAAGCGTTACAACTTTCACTGAAGAAACTAAAACAACCCAAACACAACCTATTAATACAAATCCTTCAATGTGTCCCAGCACTAGCCAAACAACTGAAGGCCATCATCTCTTTTACATACAATTAGATGGGGTGACAAAGTCTGGTGCTAGCATGGATCACATGATTGAAGGTGTTGCTGTCAAAATGGGTACAGAAGATGGTGATGATCGTGTCATTATGCGAGCTAAGCTGGTTAATAAATCCGAAGTGGATGTAAACAAAAGTACTACCGACAATTTGGCAAATCAAACTGAGCCTGTCCGTGAAATGGTCCGAAGCGTTCTAGGAGGCCTTCCAGAAGGATcattcaaaaatacattcaaaccTGTAGATATAAATCCTCCAGGTCTTAGCTCTCCCCCCAGTGTAGCAGAATTTTTGTTGGCTTCCAAACAAAATACACCCAAACCAGAGGAGATCCCCAAGGCAAATGTTTCTCAACGTTCAGTCAACACATCCAGGAGGAATACAGTGCGCAAAAATGCTAATGTGACCGAATCTGTATCTTACACTAACAACACTGCATTCCCGCAAGTTGAGGACCCAGCTCAGATGGTGGAGGCTCCAGTCTTCATGCCCACGGACAAGGAGTTTcagGACCCATTGGAGTACATTGAAAATATTACTCCAGTTGCATCTCGTTTTGGCTTGTGTCGTATCATCCCTCCTGCAAGTTTCCAAGCTGAATGCAACATATCAGAAGACATGAGGTTCACTCCACACAATCAGTATGTACATCGTATGTTGCATCGTTGGGGAGCTTCGTCCAAACAAATGTGTGCCATCAAAAAGTATCTCGCTACTCAAGGTGTTTCCTTCAACCAACCACCCAAGttaagtGGCATAGAAGTGGACCTACCAAAGCTATATCATGTGGTACAGAACATGGGAGGTCTAAAAAGAGTTTTGGAGAAGAAAATGTGGCTTAAGGTTGCAGAAGAAATGTGTATTCCATTCCAAGCTCACTACATGGATATTCGTCTCGATGAAATTTACTGCAAATACTTGCTGCCATATGATACTCTTTCCAACGagGAACGTCAAAAGTTGTTTGAATCAGTAGAACGAGAGTGGCACGTCCGTCACGCTCGTATGGTAGCTCGGGCAGCTGATCCAATGCGAGAGGAAGAGGAGACAGATGCCACTGCAGCACCCAGCGTCACTGAAGATGCAGAGGAATGTGTCACACGTGGAAAATCGACAACTCTTGGTTCTTTTGCTCGGCTAGCTAGGAACATAATGACGATGCAGTTTGGAAAAGTCACCCAGCCTTCACCGGATGAAgtggAAGCAAAGTTTTGGGATTATGTAACATCTAGAAACAACCATATTTGTGTGAATTCTGGTTCCATTGATTCTAGTGTCTGGGGATATGGGTTTCCCAGTGTTAAAGCCAAAGGAAGTCCAATATCTAAACATCCATGGAATCTTAAGGTATTAACAAACAATAGTGGCTCTGTGTTGCGTTCTCTTGGTCCTATGATCGGTGTGACTGTACCGACACTTCATGTCGGAATGTTATTTTCTGCCTGCTGTTGGTACAGAGATCCTCATGGTTTGCCATGGATTGAATTCCTTCATCAAGGAGCTCCTAAAGTATGGTATGGTGTGCCGAATTCTCATGGCCATCGTTTCCGGTCTGCTTTGGCCTCCATTGTTCCTGGTCTTTGTCAGCAGAAGACTGTTTGGCTACTTTCTGACACAGCGATGGTCCCTCCTCGACTTCTGACTGCGGCCGGAGTGTCACTTTGCAGGACTGTGCAGAAACCCGGAGAATTTGTTCTTGTTTTCCCCAAAGCTTTTACATCCAGCCTGTGCACGGGCTATGCAGTATCAGAAAGTGTATACTTTGCCTTGCATACCTGGCTTCAAACTGCTCACCAAGATTTCACTGACATTCGCAACAGCTGTGAGCCCTCAATGTTCTCCCTGGAAAGGATGATGGTTGCTATATCAGAAGATCCTCGTTCTTCCTATCAAGTGCTGAAGCAGGTATTACCGGCTCTCAACAAGATCATACAACAGGAGAAGCAACATAGAGAAACACTTTTCAATCTTGGATTAAAGacTTCCGAAAGAGCCCAGTTAAATTTAACTGGAAAGAAAAAAGTTGCGAAGTGGCAAGATGAAGCAGAGGAGTGTCAAAGttattcAACAATGAAGACAGCAGTGCATATTGCCTGGTTCATGGAGCTGAGTTTCTTCAGGCGAACCCTGGTCAGGTAG
Protein Sequence
MTPKFAFCETTQLFKMFVVDEMGVPKHLIHILKNLYANSSASIRLNNALSAAFSVQKGVRQGCILSPALFNIYGEYIMRKALDGWEAGFSIGGKKISNLRFADDTTLVATNETDMKQLLDRAERESLSLDQDENIYSEKKERCPYSFGHKAHCLYVTADYRIKVQAQRKFAQGVPVIPVQTPKDNQTPSTSQEPPTETVFQLDSNNKPYTEDFLTYLCFKVFIPYGVRKQASQLPALAPPPDEEDLASKRRALQALSAKYRLETRARLRAIAFRKSGDADRVQTRSSKVLKVTKAIKKKRPNGLTENYKLVDRRVENKILENSKIIPETTELTLKKSPTNEDIEKKQIQPKKNERSEKGILKTASVREPMKTRSSRPSKIINKSTKNTSVDSKSKTLIRKHYRTRNNTQIKYITKTSDGTTLCKTRSGAIRRLKVPAKKKNPINVKKNEIIDKNIKENEDVNKNTKETTLKTLEFSSDDDEPLYKTLEVKSSASTSKDLNTSKTDVTEKVHFTRHSKVHDSSEKSPDKSQIKIKPTPEKMKVPKKIPTEKENIKSDENYNKKSKTSPENAKVKKVTTSDKKINKKNNTPIKKIPSENLLEKSKLNNALKSKNDDKHKPANEPLSPNVGRTTRHKVYSPPLNSKVINEKFSTKNNEEKPSTKIIEERSLTKVSDEKPIAKIVDEKSPSKINNDKPPTKILSAKNKNEKTLKNNDEIIEKVGKRVFDKSGNENPDKAVQGISKQIIELPEVFVKVELKNNNKKPEKTVIQKMEKNDCQKMEVEDIENEKMKQEESKEFYIKKNTTTQIKKVSKKRISESPKADSAKPKTEKKPVEKQNSEIETNTIKTRSGSKHTQHAENLQCITRSHKNSNESGDTIIKSSFQKQHEKSFTDSDEEPLASKISDTLNKSTSAKTPIKTRAKKYTKKIQTKKATPISNKPELSILIDNETREIADNFGKSLLKENHHDSSLVFGIGSDDSSTSSDDESNITSDQVERLPRFTSQKREGSPSLNGNLESNAELLDELLNSNQFYCKDGGRNRKFMKSKEYIESWLIDSARLATDSPLAELFTPINSSFKISESETPVEPATSDFPSTAEVEKVNVETQCGVELEPTILQEETEERSKVDNSRLEVIPPNSEMTIAEIFDELCSQPDLLTAAQSTINEQPELKTIVSQSQPAENSLNIYEFESDSDTSLQGFNMNDDISWKPKSLRDLQKPRKLIPLYMAKKRGTLNSGIEDSTSFPDKSSCSFSKKTEVESSKPVSPQPQISKEISAVPLASVPESVTTFTEETKTTQTQPINTNPSMCPSTSQTTEGHHLFYIQLDGVTKSGASMDHMIEGVAVKMGTEDGDDRVIMRAKLVNKSEVDVNKSTTDNLANQTEPVREMVRSVLGGLPEGSFKNTFKPVDINPPGLSSPPSVAEFLLASKQNTPKPEEIPKANVSQRSVNTSRRNTVRKNANVTESVSYTNNTAFPQVEDPAQMVEAPVFMPTDKEFQDPLEYIENITPVASRFGLCRIIPPASFQAECNISEDMRFTPHNQYVHRMLHRWGASSKQMCAIKKYLATQGVSFNQPPKLSGIEVDLPKLYHVVQNMGGLKRVLEKKMWLKVAEEMCIPFQAHYMDIRLDEIYCKYLLPYDTLSNEERQKLFESVEREWHVRHARMVARAADPMREEEETDATAAPSVTEDAEECVTRGKSTTLGSFARLARNIMTMQFGKVTQPSPDEVEAKFWDYVTSRNNHICVNSGSIDSSVWGYGFPSVKAKGSPISKHPWNLKVLTNNSGSVLRSLGPMIGVTVPTLHVGMLFSACCWYRDPHGLPWIEFLHQGAPKVWYGVPNSHGHRFRSALASIVPGLCQQKTVWLLSDTAMVPPRLLTAAGVSLCRTVQKPGEFVLVFPKAFTSSLCTGYAVSESVYFALHTWLQTAHQDFTDIRNSCEPSMFSLERMMVAISEDPRSSYQVLKQVLPALNKIIQQEKQHRETLFNLGLKTSERAQLNLTGKKKVAKWQDEAEECQSYSTMKTAVHIAWFMELSFFRRTLVR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-