Basic Information

Insect: Mochlonyx cinctipes
Gene Symbol: ush
Assembly: GCA_001014845.1
Location: JXPH01014202.1:4387-8932[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.0089 0.37 11.5 0.0 1 20 166 185 166 187 0.92

2 8 0.00049 0.02 15.5 0.8 1 23 223 245 223 245 0.98

3 8 0.034 1.4 9.7 1.4 2 21 284 303 284 304 0.92

4 8 0.091 3.8 8.3 3.3 2 21 661 680 660 681 0.94

5 8 0.012 0.49 11.1 0.0 3 21 733 751 731 752 0.91

6 8 0.0033 0.14 12.9 0.1 1 23 794 816 794 816 0.99

7 8 0.0022 0.09 13.5 1.3 1 23 893 916 893 916 0.96

8 8 0.19 8 7.3 0.3 3 21 1049 1067 1048 1068 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.0089	0.37	11.5	0.0	1	20	166	185	166	187	0.92
2	8	0.00049	0.02	15.5	0.8	1	23	223	245	223	245	0.98
3	8	0.034	1.4	9.7	1.4	2	21	284	303	284	304	0.92
4	8	0.091	3.8	8.3	3.3	2	21	661	680	660	681	0.94
5	8	0.012	0.49	11.1	0.0	3	21	733	751	731	752	0.91
6	8	0.0033	0.14	12.9	0.1	1	23	794	816	794	816	0.99
7	8	0.0022	0.09	13.5	1.3	1	23	893	916	893	916	0.96
8	8	0.19	8	7.3	0.3	3	21	1049	1067	1048	1068	0.92

Sequence Information

Coding Sequence: ATGAgagAGGATGAAGAATTGTCTGAAgagcaacaacagcaacaacaacagaaTTCAGAAGGAGGAGAAGAAATGAACAGTTCAAGACCATCAAGCCAAAATGATACCGACAGGGTATCGCCTTCCCCGACACCATCGAATTGTAGTTCAACCCCAAATTCTCATGAGGGGGATCTGGAGGACGGGAATACGGCTGTAGGagatataaaaattgaaattatggaTCGAAAATCTTCAGATTCAGAGAAGGAAGAGAATAGTAAATCCccaataataaatttccagCACCATTTACCATTGTTAAGATTGAACACTGTTCTCGCAGCTGATCCTGCTACAAATCCTGATGCAAAAGATCTCAAAAATATCACTGTAGCCAACGAAGAGAATTTTGATAAGAATGAGAAAGAATATCTTCAACCGGAGAGAATAATTGAGAAGCCAGAAAATATTACCATACCAATCAATGTAGATCTTCCTCCAAGACTGCCCGTCTTCATGTGCGGCCCTTGTGGAATACGATTCTCTTCAGCATCCACCCTGGAAGCACATCAAACATATTACTGTTCACATAGAAAAGACGCTGATGAGAATGGAGGAAAGAATTCATCAAACGATCCAAATAGCACGGAACCTCCAAACAAATCCGTTAAAACTGGAAAACAGTACGCCTGTACGCAATGTTCGTACAGCGCCGACAAAAAAGTCTCTCTAAATCGACATATGCGAATGCATCAGTCGTCTCCAACGCCCAGTTCTACCACCTCCAATGGCGACGATGCCACTAGTCAGCTCCAACTACAAATAACGGCACAAGCTCTCCAGCAGCCTCAACCTCAAATCGACCGCTACTGCTCCGATTGTGATATTAGGTTTTCAAGTACTAAAACATATCGTGCACACAAGCAGCACTACTGCAGTTCCAGACACCGTGAAGGCCAGCCGAACAATGTGACAACACCAAAACCAACCGCCACTCAAAAGTCGGGATCTCAGAGCCCAACTGAAGTGGCCAAGACACCGCCAGTAATGGCGCAGCCACAGCCTCAACCGTTTTTAGCGTTACCAACTAACCCAATTATTATAATACCTTATTCTCTGATTAGAGGCGCTAGCGTTTTACCGGGACCTATctcCTCTTTAGCTCCCAACGTTTCCAACTCCGAATCCGCCTGCTTCATCTTCCAAAATGGAGCCTTACAGCCGATCGCTTTTTCTTTAGCCTCCACATCTCAACCGCAACCCCAACCAAATGCTCAGTCACGGGTTCAAACCCCGAGTGTAGCAAACGTGAATGACAATAGCTCGAATAGTAACAGTACAGGGGAAGTTTTGAAAGCCGCCAACAAAAAAGAAGTTGCTGGAAAaGAAACTTCAACTCCACTAGATTTATCAATTAGAAGAATGTCTCCCGGAATTAGTTTGCGAGAAAGATCCTTATCACTTTCTTCCGCAATGTCTGCAGAACATTTGAAAATGGATTTCGACAGCATGATGGAAGGAAAAGAGAATCTTTCTGTTAGTGGAGATTCAGTAACACCGGAACAAATTGTTTGCGCTCCATCATTACCAGGAAGTCCGCCATTGACGCCATCTCCAAAAAGAAGGTCGAATAGTCCGAGAGGAAGCCGCTCTATTTCAATGTCTCCTTTATCGCTAGCCTCTTTacaacaacatcaacaacagCTGCTCCAAATGCGTCCTCTTCTCCCAGCGGACATTGCTCTTAGACTTTCAGACCCTTCGTTGAGCATCAACCTCAATCTCTTGCAACAACCACAATTGTCAATGAAACAAGGTCTCGAATTAGCACTCCGATTGTCCTCAAACGCCAACAGCAACCACAGTGACGCTTCCCCAAAACAACCCCAAATGTCTCCTCTTCTGAACAAGCTCAACTCTCCAACACCAAACAATTCATCAGCCGCTTCCGTCGTGATTCCGTCAGCGCCACAAATATTCGTCAAACAGGGTGACTCGAAATGCAAAGAGTGCAACATAGTTTTCTGCAAATACGAAAATTATTTGGCCCACAAAAAGCATTATTGCTCAGCCAGAAACTTGGAAGACGGTGAAAACACTAAAGTAAGTCCTCCTATATCTCCAAAATCAACAAGTCCTTCAACCCCTGGCGGTACTTCTAACTCGACTAGGGGTGGAAGCAGCGGCGCTACTGTCGCCTATCAACAATTAATCTGCGCTGCTTGTGGAATTAAATTCACTTCGCTGGACAATTTGTCTGCTCATCAAATGTACTATTGTCCAAAAAGGGTTGATTTACAAGTCCAGcaATCTTCAACTCCTCAAAAAGAAAGATGTTCAAAGTGTAAAAGCGTGCACGAATCAGGACAACCTTGCACTGTTGCAGGAGCTGGAGCATATAAATGCCCAATCTGTGAAGTGATCAGCCCTAATTCAACTGAAGCTAGACGACACATGGATACTCACGGGGGAGTTAAAGCATTTCGAGGAATGCGAACGCATATCAGAATGCATTTTGACAAAAAGACGAATGATTTCAATGAAGAAAATTACATAACATGCATTTTGGAAGAGGATGGCATTGAAATTCCTCCCGCAGCAGCAGTGGCTTCCGTAACAGCAGTCGCGAACCAAACAAACTCGGCATCACCACAATTGTTGGCTCAAACTCCAGATAATTTGCCGCAACAAATGCACTATTGTGATATGTGTAATTATTCTTCAACTTATAAAGGGAATGTGGTTCGTCATATTAGGCTAGTTCACACCCAAAACAGGACCCCATCAAACTCCCCAATGATCGGAGAGGGTGGAGAAAGTTTAGTTCACAATGGGGATGGAAATTTAACCCCTGGACCACGATCGACACACACTCCAATACCTGTTAATAacaaCCTAATAAAAACAGAACCGGCAGAGAATAAAGGTGACGAAAATGATGTGGATGTGGACGTCGTTATGGATGAACCGGAAACTATAATTAAAACGGAAATAAACGATGTTGCTTCCCCATTGTCCTCACCAATTTTATCACATAGCTTAAATCAATCtcagattaaatttaaatctcaaACAAAATCAGCGAAACCCCCATCGCCACCAGCACTTCCAAATGCCATAAACACAGACATATCCCTTTTGACCCACTCAGGTCCAAGGTACTGTGAGTCTTGCGACATCTCCTTCACATACCTAAACACTTTTATTGCCCACAAGAAGTTCTACTGCAAAAATAATCCAACTGACGCCACTGGTGGCGCTGTAAACAATGCGAATTCAGCAACTTCCGGATCCCCAAACAACAACAATGTCGTTGTGACGAGAGCGACCGAAACATCCGTTTTGTAA
Protein Sequence: MREDEELSEEQQQQQQQNSEGGEEMNSSRPSSQNDTDRVSPSPTPSNCSSTPNSHEGDLEDGNTAVGDIKIEIMDRKSSDSEKEENSKSPIINFQHHLPLLRLNTVLAADPATNPDAKDLKNITVANEENFDKNEKEYLQPERIIEKPENITIPINVDLPPRLPVFMCGPCGIRFSSASTLEAHQTYYCSHRKDADENGGKNSSNDPNSTEPPNKSVKTGKQYACTQCSYSADKKVSLNRHMRMHQSSPTPSSTTSNGDDATSQLQLQITAQALQQPQPQIDRYCSDCDIRFSSTKTYRAHKQHYCSSRHREGQPNNVTTPKPTATQKSGSQSPTEVAKTPPVMAQPQPQPFLALPTNPIIIIPYSLIRGASVLPGPISSLAPNVSNSESACFIFQNGALQPIAFSLASTSQPQPQPNAQSRVQTPSVANVNDNSSNSNSTGEVLKAANKKEVAGKETSTPLDLSIRRMSPGISLRERSLSLSSAMSAEHLKMDFDSMMEGKENLSVSGDSVTPEQIVCAPSLPGSPPLTPSPKRRSNSPRGSRSISMSPLSLASLQQHQQQLLQMRPLLPADIALRLSDPSLSINLNLLQQPQLSMKQGLELALRLSSNANSNHSDASPKQPQMSPLLNKLNSPTPNNSSAASVVIPSAPQIFVKQGDSKCKECNIVFCKYENYLAHKKHYCSARNLEDGENTKVSPPISPKSTSPSTPGGTSNSTRGGSSGATVAYQQLICAACGIKFTSLDNLSAHQMYYCPKRVDLQVQQSSTPQKERCSKCKSVHESGQPCTVAGAGAYKCPICEVISPNSTEARRHMDTHGGVKAFRGMRTHIRMHFDKKTNDFNEENYITCILEEDGIEIPPAAAVASVTAVANQTNSASPQLLAQTPDNLPQQMHYCDMCNYSSTYKGNVVRHIRLVHTQNRTPSNSPMIGEGGESLVHNGDGNLTPGPRSTHTPIPVNNNLIKTEPAENKGDENDVDVDVVMDEPETIIKTEINDVASPLSSPILSHSLNQSQIKFKSQTKSAKPPSPPALPNAINTDISLLTHSGPRYCESCDISFTYLNTFIAHKKFYCKNNPTDATGGAVNNANSATSGSPNNNNVVVTRATETSVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -