Mcic011477.1
Basic Information
- Insect
- Mochlonyx cinctipes
- Gene Symbol
- -
- Assembly
- GCA_001014845.1
- Location
- JXPH01007682.1:2982-7568[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.017 0.73 10.6 0.4 2 23 440 462 439 462 0.96 2 9 0.11 4.5 8.1 1.4 1 21 503 524 503 525 0.92 3 9 3.2e-05 0.0013 19.2 0.8 1 23 532 555 532 555 0.98 4 9 0.15 6.1 7.7 0.3 1 23 565 588 565 588 0.92 5 9 0.00011 0.0047 17.5 0.5 1 23 593 616 593 616 0.97 6 9 0.0012 0.048 14.3 4.5 2 23 621 642 620 642 0.97 7 9 0.00024 0.0099 16.5 4.8 1 23 659 682 659 682 0.98 8 9 0.0041 0.17 12.6 3.5 1 23 692 715 692 715 0.93 9 9 0.0002 0.0082 16.7 1.5 1 20 721 740 721 741 0.95
Sequence Information
- Coding Sequence
- ATGAGCTATGACACAACTGATCGTTGTTTAGAATGTATCAAAGAAGAGATTAAGGAAGAACCACAAGATAATGATGTCATTATCGTCAATAATGACCCCCTCTTCGAGACTCAAGCAGCATTAGAAGCGCATTTAATATATGCTAGCACCATTGATAGTGAAACCCCTGTTTTGGACatagaatttattgaaataaaagaagaaaatgttttCGATGAGCCCTTAAAAATTCCTGATGCTCCAGCTAACAAGgtgTTGTCATTAGCTGACATTCCTGTCATTTGCCGCATTTGTCGAGAAGCAATTCCAAACACATTAAGAAAGTTGAATGAGCATTACAACACACTGCATAATGGTAACAAATTCAAATGTACAATATGTTGTGACAAATTATTCAAAGATCAAAGATTTTGGCGAAGTCATGAATTCGAAGCTGAGAATgagattgaaaatttaaaatttaaaaagataacTTTGAAAAAGCAAGAATTAGTAACTGGTCGTCAGTGCCATGAAACCGAATTGAAAAGAAAGACTCCAGAAAAAAGTGCTGTAACTATAAATGCTGCAGATATCGAAATCGAAGTAAAAAGTAAAGACAAAATTATTCAGAATGCTCCTGAAAAACTAGCTGTAATATCTGAGTTAACACCAATTATCACTCCAAATAAGAGTGCTGCaattattgaaacaataaatataGCAGATATCGAAATCCAACTAAAAAATACAGAAGAAAATATTCTGAAACAATTAAAAACGTATGGTAGTCAGCGCCAAAAATCCGAATTGAAAATAAAGACTTCAGAAAACGGTGATGCAACTATTGAAACTATAAATGTTGCAGATATCGAAATCCATGTAAAAAATAGAGAAGAAATTATTCAGAAACAGTTAAAAACTTATGGTCATCAGTGGCAAAAATCCGAATTGAAAAGAAAGACTCCAGAAAAGGGTCCTGCAACTAAAACTATAAATATTGCAGATATCGATACAGatattctgaatgttcctgaaGAACGAGCTGTAATACAGAAAAATTGGAATCTAACAAATGAGGACCCCAAAGATAAAGCAAACCTGCCAATAACTTGTCAGATTTGTTCAATCTTGGTACCCAATGTTCTTAGTAGAATTGCCCTGCACTACAACCAGGAGCATGGCggatataaatttaaatgtacaGTTTGTTGCGACACATTGTTCAACTCAAAGATACAATGGCAGACTCACGAGGCAATTGCTAAAAAAgatgtcaaaattaaattaaattataacatTCAAAGCGATCATGTTGCttcaaaaattcaacaaataCAATGCAAAAATTGTCCACAGCTATTCAAATCTGCCGGAAGAATGCAGAAGCATTGGAATAGTTTGCATTCCGAAAAAGCGCTCAAAAAGTTggaaacattgaaaaataaaactttttgcagAATTTGTTCACTTGATATTCATTTGAAGAAAGCTGAACATTACAAAACCGTCCACAACAACTACCATTATAAATGTACCGTTTGTTGCGATAAATTATTCCAAACAAAATGGAATTTAGAAATTCACCTAAATAAATTAAGTGACAAGCGACCGTATTCCTGCGAGATTTGCTCTAAAAGTTTTAGGGGAAGCCTTACCTTAAAAGCCCATACAAGAATGTCGCACCCAAAAGGTAAGTACCAGGATCGACCGTTTAAATGCGATACTTGCAATAAACGTTATCTTGTCGCCGGCGTATTAAAAGCTCATAAAATGTCGGCACACGGTCCGAAAATCCACAAGTGTCCCCAATGTGGTACTTTATTTGGACTAGAAAGCAACCTGAAAAACCATATTAAAGTGATACATGGCGAAAGAACAGTTTGTCATCTTTGTGCTAAAACGTGTACATCagaaactaatttaaaaatacacttGAAGACCCACGAAAATCAAAACAAACGGTTGAAAAAACTGGAGGCCAGTTCGCAAATATTCACATGTGcatattgtacaaaaaaattttaccaaaaacattATCTCGATAATCATATAAGGGTAAAACATAGGCACTACGAAGAAAATGAATACTTATATACTTGCGACTTATGCCAGACCAAATTTGTTCACAAAGATAGATTACGACTGCATATGGACTTCAAACATGTAACCGAGAAGAAGTATGAATGTGAAATTTGCAAGCGTAAATTTAGAAATTATAGCACATTGTTTGCccacaaaaaatgtaaatttgtaCATGCGCACATCCTTGACGAAAATAAACTTATGGACGAGAAAACGTGTTAG
- Protein Sequence
- MSYDTTDRCLECIKEEIKEEPQDNDVIIVNNDPLFETQAALEAHLIYASTIDSETPVLDIEFIEIKEENVFDEPLKIPDAPANKVLSLADIPVICRICREAIPNTLRKLNEHYNTLHNGNKFKCTICCDKLFKDQRFWRSHEFEAENEIENLKFKKITLKKQELVTGRQCHETELKRKTPEKSAVTINAADIEIEVKSKDKIIQNAPEKLAVISELTPIITPNKSAAIIETINIADIEIQLKNTEENILKQLKTYGSQRQKSELKIKTSENGDATIETINVADIEIHVKNREEIIQKQLKTYGHQWQKSELKRKTPEKGPATKTINIADIDTDILNVPEERAVIQKNWNLTNEDPKDKANLPITCQICSILVPNVLSRIALHYNQEHGGYKFKCTVCCDTLFNSKIQWQTHEAIAKKDVKIKLNYNIQSDHVASKIQQIQCKNCPQLFKSAGRMQKHWNSLHSEKALKKLETLKNKTFCRICSLDIHLKKAEHYKTVHNNYHYKCTVCCDKLFQTKWNLEIHLNKLSDKRPYSCEICSKSFRGSLTLKAHTRMSHPKGKYQDRPFKCDTCNKRYLVAGVLKAHKMSAHGPKIHKCPQCGTLFGLESNLKNHIKVIHGERTVCHLCAKTCTSETNLKIHLKTHENQNKRLKKLEASSQIFTCAYCTKKFYQKHYLDNHIRVKHRHYEENEYLYTCDLCQTKFVHKDRLRLHMDFKHVTEKKYECEICKRKFRNYSTLFAHKKCKFVHAHILDENKLMDEKTC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -