Mcic007675.1
Basic Information
- Insect
- Mochlonyx cinctipes
- Gene Symbol
- -
- Assembly
- GCA_001014845.1
- Location
- JXPH01081121.1:90-2550[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.12 5.1 7.9 0.9 2 23 213 235 212 235 0.97 2 15 0.089 3.7 8.4 0.0 1 23 269 292 269 292 0.97 3 15 1 42 5.1 2.3 1 23 297 322 297 322 0.92 4 15 5.4 2.2e+02 2.8 2.7 3 23 375 398 373 398 0.88 5 15 0.076 3.2 8.6 2.1 1 19 415 433 415 436 0.95 6 15 0.0028 0.12 13.1 1.9 1 23 443 465 443 465 0.98 7 15 0.31 13 6.7 2.6 1 23 470 495 470 495 0.89 8 15 0.00016 0.0068 17.0 0.9 1 21 514 534 514 535 0.96 9 15 0.1 4.3 8.2 0.0 1 23 542 564 542 564 0.93 10 15 3.8e-05 0.0016 19.0 2.9 1 23 569 591 569 591 0.97 11 15 0.00015 0.0061 17.1 0.9 1 23 598 620 598 620 0.97 12 15 0.00033 0.014 16.0 4.9 1 23 626 649 626 649 0.97 13 15 1.4 56 4.7 5.6 1 16 655 670 655 678 0.83 14 15 0.061 2.5 8.9 3.1 1 23 684 706 684 706 0.96 15 15 0.024 1 10.2 1.1 3 23 716 737 714 737 0.95
Sequence Information
- Coding Sequence
- ATGGATGTGTGCCGTGTTTGTCTGTCTAAATTGAAATTCCAGATAACGATTTTTGACAAAGTAGCAGGAGAATCAATATCGAAAATAATTGGGCTGTGCTCAGGGATTCAGATTCAGGAAAATGACAAACTCACTAAAAACGTATGCCACGTTTGTCTGGGTAGGTTGGAAAATTTTGTGTCGCTCCGCAAAGATTGCATAAATTCTCAAATGGAACTAGAGAGCATGCTCTGCAGTAGCGATAACAAATTTGATAACGTAAGTATCGAAGTCGAAAAGGAACATGAGAGCAGTAGCGATAACAAATTAGATAACATAAGTATCGAAGTCGAAAAAGAACTAGAGAGCATCAGTAGGAATATAGATAACTTATTTGAAAATGaggaaattaaaatagaaattgttGAGCTGATAGAGGTGGCTGATTGTTTACAAAAGGAACCGGAAGAAAAGGaagatgattatgatgatgacgatgaagaGTTTGTTGCCAAGAGCAAAAAACGAAAAAGATCTAGTAGAAAAGTTACCGAAAAGGTTGTAACTTCAACATCCTCAAAAAGAAAACTGTCTGCCAGGGATTTGGGGTGCAAACAACCGATTTTTGAGTACGAACCGGATGAGTCAGGGGCAGTAAAGTGTTGTGGATGTGACACTATTCTTCAAACTTACGAAGAATTGCTATCCCACACAAGAATGCTGCATGAGCCACAGAATTCATATCAGACAAACAAAAATGAATGcagtttttgttttgaattgcTGAATGAAGCACAAACTATTGTGGATCACATTAAAGTAAGCTATGTTTGTGACATGTGTACAGCAACTTACCCTACACTGGCCGCTTACGATGAACATTTGAAtgtttttcatctagaaatggactttaaatgttGTGGTATTGGCTGTGAATTTAGATGCGATACTTTAGAGGAGCTAAAAGAACACACGAACGAACTTCATAGCGCATTTAGGGACAGGTCGAGAGGAAAAGGAATCGAATGTGATATTTGCTTTAAGAAACTGAAGGTTGGAACCCCTTTGGAAGGGCATAAGATGAACGCGTACGTAAAGGCAATTGAAGGCgacataaaaaaaaagaataaagagATTTTGAGATGTTGCGGCCGGCATTGTAATAGTCAGTTTGAAACCACTGAGAAATTAGATGAGCACATAAAGGAAGTTCATTTGCCAAACAGAATATTGGACGACGACCCTGCAGCAAAAGAATTGTCATTTGAATGTAAAGGCTGCTTTTCTAGATTCAGAACATCAGAAAATCGAAAAAGGCACAATACTAGAgtatttagcaaaaaaatatttaaatgccATATTTGTACGGCCTCAAGAAGAACACAAGAAGAGTTGACAGAACATGAAACCACTCACAAAGATTTAGTCTTCAAATGCTGCTCTCAGAAATGCAAATTCACTTCAAAAACACGGGAAGAACTAGAAGCGCATGGAAAAGAAATTCATGTTAAACAGAAAGAcatgtttttctttcaaaatgatGGAAAGCAAGATAGAGCTTTCAAATGTGAGATTTGTTTTAAGTCATACTCAACAAATAAGGAACTGAGTGTACACAAGAGACTGCCTTACGCGGAAAAAAAGTACGTTTGCGACCTATGTGGTGTTTCATTTGTTGCTgctaatattttggaaaaacacAAAGAAGTCCACAGTGTGGAACAGCACCCTTGTAAGTattgtggaaaaatatttaaaacacaaAGTCTTCGAAAGATTCACTATATAACTCATGAAGATGTCGAGAAGAAATTTATTTGCCAAATCTGTAAAAAAGCCTACAGAAATCGCCGTCTTTTAATCTCTCATTTAACATCGCATTCTTCAGACCGTGATTTCAAATGTACTGCGTGCCCGCAAACATTTAAACGGCAACATCACCTCCTTAGCCATGTTAAGAGGATACATATTCAAGAACAGCACTTTCAGTGTGATTATTGCGAGAAgagattttttgacaaaaatcataaaaagtgtCATGAGGAGAATGTCCATTTAAAAATTCCGAATTTCACCTGCAGATTTTGTCATAAAACATACGCTGTTCGAAACGACTACATGACTCACGTGGAAAATCACTTACCTAATGATCAGAAGGAGTTTGGGTGTCCGAAGTGCGAGAAACGGTTCACCGAAAAACAATTCTTGGATAGCCATTTTCAGGTGAACCATTTGGAAATTGGGGGAACTCTGACGGAAGTTATGCAGATGCGAGGAGCTGAAGAAGGTGGTTCTGATTATAATACTGATGATTTAATTGCGGAAGAAAATGATGTCGatatttaa
- Protein Sequence
- MDVCRVCLSKLKFQITIFDKVAGESISKIIGLCSGIQIQENDKLTKNVCHVCLGRLENFVSLRKDCINSQMELESMLCSSDNKFDNVSIEVEKEHESSSDNKLDNISIEVEKELESISRNIDNLFENEEIKIEIVELIEVADCLQKEPEEKEDDYDDDDEEFVAKSKKRKRSSRKVTEKVVTSTSSKRKLSARDLGCKQPIFEYEPDESGAVKCCGCDTILQTYEELLSHTRMLHEPQNSYQTNKNECSFCFELLNEAQTIVDHIKVSYVCDMCTATYPTLAAYDEHLNVFHLEMDFKCCGIGCEFRCDTLEELKEHTNELHSAFRDRSRGKGIECDICFKKLKVGTPLEGHKMNAYVKAIEGDIKKKNKEILRCCGRHCNSQFETTEKLDEHIKEVHLPNRILDDDPAAKELSFECKGCFSRFRTSENRKRHNTRVFSKKIFKCHICTASRRTQEELTEHETTHKDLVFKCCSQKCKFTSKTREELEAHGKEIHVKQKDMFFFQNDGKQDRAFKCEICFKSYSTNKELSVHKRLPYAEKKYVCDLCGVSFVAANILEKHKEVHSVEQHPCKYCGKIFKTQSLRKIHYITHEDVEKKFICQICKKAYRNRRLLISHLTSHSSDRDFKCTACPQTFKRQHHLLSHVKRIHIQEQHFQCDYCEKRFFDKNHKKCHEENVHLKIPNFTCRFCHKTYAVRNDYMTHVENHLPNDQKEFGCPKCEKRFTEKQFLDSHFQVNHLEIGGTLTEVMQMRGAEEGGSDYNTDDLIAEENDVDI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -