Mcic014666.1
Basic Information
- Insect
- Mochlonyx cinctipes
- Gene Symbol
- hang
- Assembly
- GCA_001014845.1
- Location
- JXPH01094898.1:1-2575[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00035 0.015 15.9 0.7 2 23 101 123 101 123 0.95 2 14 4 1.7e+02 3.2 6.0 3 23 206 228 204 228 0.90 3 14 0.15 6.2 7.7 0.7 2 21 234 253 234 254 0.93 4 14 0.013 0.53 11.0 1.2 3 23 298 319 296 319 0.90 5 14 1.1 46 4.9 0.3 3 21 333 351 332 352 0.89 6 14 7 2.9e+02 2.4 0.5 3 23 361 382 359 382 0.89 7 14 0.0004 0.017 15.8 0.7 3 23 416 437 414 437 0.95 8 14 1.5e-05 0.00063 20.2 0.3 1 23 445 468 445 468 0.97 9 14 0.14 5.6 7.8 2.4 1 23 496 519 496 519 0.96 10 14 0.87 36 5.3 0.7 1 23 522 545 522 545 0.89 11 14 0.0059 0.25 12.1 0.9 1 23 558 581 558 581 0.92 12 14 0.019 0.77 10.5 0.2 2 23 650 672 649 672 0.92 13 14 0.18 7.4 7.4 0.5 3 23 681 702 681 702 0.96 14 14 0.00044 0.018 15.6 0.4 2 23 749 771 748 771 0.96
Sequence Information
- Coding Sequence
- CGCAATGATGTCGTTATGGATATTGATCCCACCCAATTCCTAGCCCAAGAAGATGAAGATGATTACAATAATGACAACGATGATCAAAAAATGGATCACGTAGAGAATGGCGAAGGCCCATCAATTTTAACTTCTCTTGGACTAACTCATATCAAAGTTGCTAATCAATACAGTTATCAGaacTCTGAAAATGATTACGGGGGCGACGATTCCAGCCCGGAAGATGACAAGTCTGCGATTCTAAATATGCTCTCAAATCAATTTGGACTAGATCCATCAAATATGCAAATAGGCATTGCATCGTGTTCAATTTGTGATATGAAATTCAGTAATCGTGCAAATGCTCGTCGTCACGAGAGAAACATTCACGGGGTAATTTTGAATCCTTTGAATGCTCCCACTAATTCACAGCCGTCGACACCGCAACCACCACCATTGATGCCGTCGATAACATCGCCACCGGATGTCAAGCCGAGAATGAAGATGAAATTCAAGCCACCACCAGAAGTCTACGATTATTCAGATCCTGCAAAGTATCGCCACCTTGTAACTCCCAACAAATTAGCGTTTATTCTGAGAAATCTCGATTTCTTGGAGCAGGCGCAAGACATGCACTGTAAatgttgcaataaaatattcCCGTCTTACAAATATTTCATGGGGCATATGCGAAAGAAATTCCACCACCTTCCCAGAAACGTTTGCTTCAAATGCTTACGGCAGTTTACGAGTAAAGGCCAGTTTATCGGTCATTTGAAGCGTAAAAGCTGCATTAATTTGTACAACGTCGTCATGGCGGATGACACAATACCAAAAGATCCCCCACCAAGTCCAGTGAAGGACCCAAATCGTCCTGGAACAAAGGACATTATCGCCAACAAGACTTATGGATGTAAATTGTGCAGCAAAACATTCCGCTTGAAGAACGATTTCCGTCAGCATGTCTATGAAGAGCATGCTGAGATACAGAGGAGCAAAGAAATTCCAGGGGCTTCATGCGCCTATTGTAATGCAACATTTGATGACTCACAAGTTCGTCGAAGGCATTACAACAATTTGGACTGCATCGTTTTCATTATCTGTGGCACCTGTGAGGATAGATTTGAATCACATACAAATTACATTGACCACGTCTATCAGACACATTTAACACAACAACTGAATGGAACTCACGACGAATACGGGTATGATTTGTTCGATCAAGATGCAAATTCGCCTACGTCACACTTGAGGAATCCTCAAAATTGTCCTGTTTGCAATAAACAGTACAACAATTATTATAACGTACTAAGACACATGGAGTCTAAGCATCCGAATCAGCTCCCACAAATCTATCAATGCCAGAAATGCGAAGAAGGTTTTCCACGACAATCCGAGTTACGTGAACATCTCCAAAATGTCCACGGTGAAATGGTGGTGCGTCAACAGAAGCAGCAGCAGATTCAACAACATTTTCAATTGATCCAGCAACAGAACAAAATCAATTTCACTTGTAAACAGTGCGAACATTCCTCCACAAATCTAACAGACTGGATCGAGCATCAGCATATCGAGCACGCCAAGTTTGTGTGCACAAAATGCCCATTTGTCGGCGAAGATCGCGACGAGTTTGCCCAGCATTGCCTTACCGAACACAACAATTTCAGTTTGAACAATTTGAAAGTGAAGTTTTATTCATGCACGAAATGTACAAACTCGTATAGTACGAGTCAAGGGCTGAAAGAGCATTTGGTACAGGATCATGGCATGAATCCTATGGAGCTCGACGAAAGCCTTAATGAGAGCATTGAGGAGACGGACAAGAGCACGATTACACCCGGGTTTGATATACGAAACAATTTGCATACGATTTTAGCGAACGCAATGGCGATCAAAAATGAAAAGGAACCGTCCCCGAGCCCCTTGATGGTCAGTTTGACAAATGGACCTGAGACAAGTGGCCAAATCAGTTGCCGGCTTTGTAATCGCAGAATGAACGATAACGCTGAATTAAGACGTCACATGGCGGAAGCGCATGGAATGGAGAATAAATTTGTCGGCTGCAACATCTGCCAGGCGAAATTCATGAACGATAAAGGCTTGAAAGTGCACTTATTCAGAGTACATGGTATACGAGAAGAAGTTGCGGCACCAGCAGTAGCAACAGCAACAACTGCAGTCGTTGCTGCTCCAGCTCCTGTTCCAGCTTTAACGCTTATTGCAAAACCCCAGCAGACACTAATTTCATTGCCCGAAATTAAGGTCGAATGTAAAATTTGCCACATTGTATACAAGAACGAAGAGCAGTTGAGAATGCACACGGCGACAGTACACAATACGTCTGGTGGTAATGAAAGGTAG
- Protein Sequence
- RNDVVMDIDPTQFLAQEDEDDYNNDNDDQKMDHVENGEGPSILTSLGLTHIKVANQYSYQNSENDYGGDDSSPEDDKSAILNMLSNQFGLDPSNMQIGIASCSICDMKFSNRANARRHERNIHGVILNPLNAPTNSQPSTPQPPPLMPSITSPPDVKPRMKMKFKPPPEVYDYSDPAKYRHLVTPNKLAFILRNLDFLEQAQDMHCKCCNKIFPSYKYFMGHMRKKFHHLPRNVCFKCLRQFTSKGQFIGHLKRKSCINLYNVVMADDTIPKDPPPSPVKDPNRPGTKDIIANKTYGCKLCSKTFRLKNDFRQHVYEEHAEIQRSKEIPGASCAYCNATFDDSQVRRRHYNNLDCIVFIICGTCEDRFESHTNYIDHVYQTHLTQQLNGTHDEYGYDLFDQDANSPTSHLRNPQNCPVCNKQYNNYYNVLRHMESKHPNQLPQIYQCQKCEEGFPRQSELREHLQNVHGEMVVRQQKQQQIQQHFQLIQQQNKINFTCKQCEHSSTNLTDWIEHQHIEHAKFVCTKCPFVGEDRDEFAQHCLTEHNNFSLNNLKVKFYSCTKCTNSYSTSQGLKEHLVQDHGMNPMELDESLNESIEETDKSTITPGFDIRNNLHTILANAMAIKNEKEPSPSPLMVSLTNGPETSGQISCRLCNRRMNDNAELRRHMAEAHGMENKFVGCNICQAKFMNDKGLKVHLFRVHGIREEVAAPAVATATTAVVAAPAPVPALTLIAKPQQTLISLPEIKVECKICHIVYKNEEQLRMHTATVHNTSGGNER
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -