Mcic006236.1
Basic Information
- Insect
- Mochlonyx cinctipes
- Gene Symbol
- ZNF212_1
- Assembly
- GCA_001014845.1
- Location
- JXPH01028901.1:1956-5395[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.43 18 6.2 0.3 2 20 113 133 112 136 0.90 2 14 0.81 33 5.4 5.9 1 23 173 195 173 195 0.98 3 14 5.3 2.2e+02 2.8 0.1 2 23 215 236 214 236 0.94 4 14 0.041 1.7 9.4 2.3 2 23 273 295 272 295 0.96 5 14 1.5e-05 0.0006 20.3 3.3 1 23 314 336 314 336 0.98 6 14 3.7e-05 0.0015 19.0 2.4 2 23 344 365 343 365 0.96 7 14 0.00033 0.014 16.0 0.1 1 23 371 393 371 393 0.96 8 14 0.49 20 6.1 5.0 1 23 399 421 399 421 0.98 9 14 0.32 13 6.6 1.0 2 23 436 458 435 458 0.92 10 14 0.81 34 5.4 4.2 1 20 466 485 466 489 0.76 11 14 0.0091 0.38 11.5 0.8 2 23 496 517 495 517 0.97 12 14 0.00014 0.0058 17.2 0.5 1 23 523 545 523 545 0.99 13 14 2.6e-06 0.00011 22.6 0.2 1 23 551 573 551 573 0.98 14 14 0.0078 0.32 11.7 6.0 1 23 579 601 579 601 0.97
Sequence Information
- Coding Sequence
- TTCAATATTCAAAGGATTATAGATGAAGTAGTAGGCAGAACGCCAGAAGAACTGCTCAGTATTCCAATTAATATTAAAGATGAGCCAAATGATAATGAAAGAGAAGTAGAAGTAGAAAAGAAAGAAGCAGTagaaaaatttactttcttcGATATAATTGTCATCAAGGAGGAAGAAAAAATAGATGTCGAATGCCATGAATCGGTTCCAGTAGAAAACGAAATAGAAATGGAGGAAGATATCAAAACACCTGTCCCTATTTCAGAGAACAATATCGTTGAAGAACCTCCTACACCGGCTCCCATTAAGCAGCGTAAGAAAATTAAAGCTCCAATCAAGTGTTTCATgtgtgaaaaaccaaaaagttttgCCACGCAACAACTTCTCGAATCTCATCTTCCACAGCACAACGACAAACTACCGTTCAATTGTACAAATTGCAATGAaaatttagaaatcatttgtgacaTTAGCTTTGCAAACAGACATTTGGCACTGCACGATGAGAATAGAAAGCATAAGTGTCGCTTCTGTAACTACAGATTCTTCTGGAAACGACTCTTGATCAAGCATGAAAAAACACACACTGAAAAAGAGTCACAGAGGAATTCGTATAAGGAGTATTTGGACAGAGTCAAAGTGAAATGCTATTTCTGCGACCTAGATTTGGGATCTGAAGATCTACTAATTCTTCATTTCAAAGAGCATTTAGACATTCTTCCATTCACTTGTAAATTATGCAATGATAATACAGCGAGAACGTTGAACGGGGCCAATAGGCATTTACAGATGCACGATGAGAAAGAGAGACCAATTAAATGTCGAACCTGTGAATTAcgtttcaaaaataatgcaaatcgtaGGGAGCACGAGAAAAGAAGACATCAGGAAAATGAAGAGAATCCCAGAATAAACCTTCCTACAATAAGTGAGAAAAAATACCAATGCCTTCATTGTGGACGACTGTTTACGAGGAAAGAGCAGCTGAAAACTCATGAGCTTACTCACTTTAGTCCATCAGACAGATGTAAATGTAAAGTTTGTGGTAAAGTGCTATCGAATAAAGTGAATTTATTAAGGCACAATCGACTTCACACAGGCGAAAAGCCCTATATTTGTTCTTACTGTCCGGCCAAATTTAATCAAGCTGGGCTTTTAAAGGAGCATCTTGTTATCCATACAGGTGGAACACCGCATCAGTGCCATATCTGCGCAAAAGTCTGCCTTTCACAGTACAGATTATCGGtccatttaaaaattcatacatTGAGAGGAAAAGCGTCGGCAACGGCATCATATCCGCAGCAATGCTCAATTTGCGAGATGAAATTCAACAAACATTCCGTGTGGGTTGAGCATACGATCAAAGAACACCCAAATGCAGCTGTTACCTATTACCAATGCGACCACTGCCCAAAGaagtttttgctcaaaaatagaTTATACCATCATGTCTATCAGCAGCATCAATTGCATGAGAGACTAAAGTGTGATATTTGCAAAAAGTACATGGCCAATAAGTCTCAGTTGCTGGACCACAATAACACACACACCGGTGCGCAACCATACAAATGTAATATTTGTAATAAACAAATAAGATTCGCCGTCAACGTTCGGCGTCACATGTTGATACACAGTAATGATCGTAGATACAGTTGTGACACCTGTGGGAAGGCGTTCATACAGCTGGTCCAGCTTCAGGCCCACAACCGGACACATACTGGGGAGAAGCCCTTTGAATGCCACGTTTGCCAAAAACGATTTTCTGATCGAGGAGCTTGTAAAAAACATACAAAGTTACATGTTACTTCTGTTGCTTGA
- Protein Sequence
- FNIQRIIDEVVGRTPEELLSIPINIKDEPNDNEREVEVEKKEAVEKFTFFDIIVIKEEEKIDVECHESVPVENEIEMEEDIKTPVPISENNIVEEPPTPAPIKQRKKIKAPIKCFMCEKPKSFATQQLLESHLPQHNDKLPFNCTNCNENLEIICDISFANRHLALHDENRKHKCRFCNYRFFWKRLLIKHEKTHTEKESQRNSYKEYLDRVKVKCYFCDLDLGSEDLLILHFKEHLDILPFTCKLCNDNTARTLNGANRHLQMHDEKERPIKCRTCELRFKNNANRREHEKRRHQENEENPRINLPTISEKKYQCLHCGRLFTRKEQLKTHELTHFSPSDRCKCKVCGKVLSNKVNLLRHNRLHTGEKPYICSYCPAKFNQAGLLKEHLVIHTGGTPHQCHICAKVCLSQYRLSVHLKIHTLRGKASATASYPQQCSICEMKFNKHSVWVEHTIKEHPNAAVTYYQCDHCPKKFLLKNRLYHHVYQQHQLHERLKCDICKKYMANKSQLLDHNNTHTGAQPYKCNICNKQIRFAVNVRRHMLIHSNDRRYSCDTCGKAFIQLVQLQAHNRTHTGEKPFECHVCQKRFSDRGACKKHTKLHVTSVA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -