Mcic004338.1
Basic Information
- Insect
- Mochlonyx cinctipes
- Gene Symbol
- -
- Assembly
- GCA_001014845.1
- Location
- JXPH01072756.1:1-3051[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 8.2 3.4e+02 2.2 0.1 2 12 35 45 35 49 0.86 2 15 1.3 55 4.7 0.1 3 23 69 90 68 90 0.89 3 15 0.0048 0.2 12.4 0.4 1 21 102 122 102 123 0.95 4 15 0.026 1.1 10.1 0.5 1 23 166 189 166 189 0.95 5 15 2.3 97 3.9 0.2 1 10 204 213 204 221 0.77 6 15 0.092 3.8 8.3 0.7 1 19 237 255 237 256 0.94 7 15 0.083 3.4 8.5 1.8 1 19 271 289 271 292 0.82 8 15 0.0086 0.36 11.6 1.2 2 23 310 332 309 332 0.95 9 15 3.8 1.6e+02 3.2 0.4 1 20 346 365 346 367 0.91 10 15 0.0032 0.13 12.9 0.5 1 23 374 397 374 397 0.95 11 15 0.00024 0.01 16.4 4.9 1 23 402 424 402 424 0.98 12 15 0.59 24 5.8 0.8 1 23 428 450 428 450 0.79 13 15 3.4e-06 0.00014 22.3 0.4 1 23 456 478 456 478 0.98 14 15 0.15 6.4 7.6 8.4 1 23 484 506 484 506 0.97 15 15 1.4e-05 0.0006 20.3 0.3 1 23 512 534 512 534 0.96
Sequence Information
- Coding Sequence
- TTGACATACAAAAATGAAACAGAATTGCAGCAGCACGCGCTTAATGTCCACAAAAGAGGCCCGCCCGAATTGAGCGAAGAGCAGAAAAAGAAATACATTCGAGAATGTACAATTTGCTACCGTATATTTGAAAGTAGCCTGTACATAAACCAGGGACACAACCGAGCAGAGTTTGTGTCGCGTCTAAAAATCATCAATGCGCCCTGTTGTGGTTGTATTGAATCTTTTCCAACGTTAGAACTCTTGAAGGAGCATGGGGCGATCGTGCATATTGGAAATAAGCACGAGAATCCAAGTAGACCTTTTGAGTGCGACGTTTGTTTCACACGCTTCAAAAACGAAAGAAACGTTCGAGATCATGTCCGTCTTAGTATCGGGGGCGCGAAACCAAGCATTGAGGAGAGGATGAGAAGACAAGAAGTAGTCGATAATAACGAGTCTGAAGATGAGAATGAAATGGGGCCGCAAAAGAAAAAGAAGCGCATTATTGGAAAATATGAATGTTGTGGCTGTCCACTGCTCTTCAACACATTTGAGCTGCTAGAAGCGCACGGTCGAGAGAAGCACGAGAAGCCAGCAGAGCAGTTTGAAATCGAAAACGTTACGGTTCATCAATGTACAATTTGTTTTGAGACATTTTTGGGCGCTTCTTACTTACAAAAAGGTCACAAACAATTATCATTCCAAAATCGCCTGAAAGTAATCAATTTCCCGTGTTGTGCTTGTAACAAATCGTATAGTAGCTACGAAGAATTGCTGGAGCATGCTCCAGAACACGATGGCAATCAGGTTGATGAGCCAAATAAACCTTTTGCTTgcaaaatttgcttcaaaaaatttaaatcaaaaaaatctgtTGTATTTCATCGTAGAATGAGTACGCAATTAAATCGTGCAAAATATGAGCTAGAAGTGACAAACGAAGTAAGATGTTGTGGATGTAAAGAGGTCTTTGAAACTACAGAAGAACTTCGGATGCATTCCCGTTTGTTGCACGAGTCATTAAGGAATTTGATTGGACACCCAAACCGCTCGCATGAATGTGACGTCTGCTTCAGGTGGTATGCGAGCGCAGAAAGGCTGGAGCATCATCAGTACCTCCCATACTTTACTAAAAAGTACATTTGCCAGCAGTGCGGGGAAAGATACGAAACAGCAACTAAACTGAGTCTTCATGTCAAACAATTTCACGAAATTATAGAGTACATTTGCAACATTTGCTCAAAAGTGTTTACGAGAAAAAGCTCCCATACTTATCACATGAAAAAGCACGCCCAAATCTTCATTTGTGACGTCTGCGGAAAAATATCTAGGTCCAAGAGAGGACACGAGGACCATTCATCGATGCATTCAACGGAGACTCCATATGCTTGTAGTATTtgcgataaaaaatttaaaaggatCGATTTGGTCAAAATACATATGCGGGTCCATTCGGGATTTTGTCCGTTCAGCTGTAGGTACTGTAACCGCGGTTTCAAGCACTACAGCGACTGTAAGCGGCACGAAATGAAGCATACAGGAAAGTTCCCATATAGCTGCAAAGTGTGTGGCAAGGACTTTTCTCGCAAAAAAAACTGGATTGATCATGAGGCAATACATGGAAAATTTGCGGTAAAAGGAAATGATGCGGACGATGATGGTGATGGTCAGGATGCTAAAGCTGAATATAAAACGGACACTGATGATGGGCTGGACGAGGAGGTCGAGTATGCATAA
- Protein Sequence
- LTYKNETELQQHALNVHKRGPPELSEEQKKKYIRECTICYRIFESSLYINQGHNRAEFVSRLKIINAPCCGCIESFPTLELLKEHGAIVHIGNKHENPSRPFECDVCFTRFKNERNVRDHVRLSIGGAKPSIEERMRRQEVVDNNESEDENEMGPQKKKKRIIGKYECCGCPLLFNTFELLEAHGREKHEKPAEQFEIENVTVHQCTICFETFLGASYLQKGHKQLSFQNRLKVINFPCCACNKSYSSYEELLEHAPEHDGNQVDEPNKPFACKICFKKFKSKKSVVFHRRMSTQLNRAKYELEVTNEVRCCGCKEVFETTEELRMHSRLLHESLRNLIGHPNRSHECDVCFRWYASAERLEHHQYLPYFTKKYICQQCGERYETATKLSLHVKQFHEIIEYICNICSKVFTRKSSHTYHMKKHAQIFICDVCGKISRSKRGHEDHSSMHSTETPYACSICDKKFKRIDLVKIHMRVHSGFCPFSCRYCNRGFKHYSDCKRHEMKHTGKFPYSCKVCGKDFSRKKNWIDHEAIHGKFAVKGNDADDDGDGQDAKAEYKTDTDDGLDEEVEYA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -