Mcic015910.1
Basic Information
- Insect
- Mochlonyx cinctipes
- Gene Symbol
- -
- Assembly
- GCA_001014845.1
- Location
- JXPH01028891.1:248-2154[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.099 4.1 8.2 0.1 2 23 216 238 215 238 0.95 2 12 4.3 1.8e+02 3.1 1.3 2 13 245 256 244 266 0.71 3 12 1.1e-05 0.00047 20.7 1.6 3 23 287 308 286 308 0.96 4 12 0.026 1.1 10.1 4.6 3 23 316 336 315 336 0.98 5 12 8.2e-05 0.0034 17.9 3.1 1 23 342 364 342 364 0.98 6 12 0.00038 0.016 15.8 2.1 1 20 370 389 370 390 0.95 7 12 6.7 2.8e+02 2.5 0.1 3 23 419 440 417 440 0.90 8 12 0.0019 0.078 13.7 0.7 1 23 445 468 445 468 0.98 9 12 0.024 1 10.2 3.0 2 20 483 501 482 503 0.93 10 12 1.6e-05 0.00066 20.2 1.0 1 23 513 536 513 536 0.96 11 12 6.4e-05 0.0027 18.3 1.9 1 23 542 564 542 564 0.98 12 12 0.024 1 10.2 7.2 1 23 570 592 570 593 0.95
Sequence Information
- Coding Sequence
- ATGGGAACCGAAATAGGAGAAAAAAGGgtcttgtttaaaaataaaataatagatcTTAACAAAATCTGCCGGCTATGCATCAAGGAATCATCTCCGCTCTACTGTGTCGAAGGAAAAATTAATGATGAAGATTGGAAAATAGCCCAAGTCATTTCGATTTGTTACAAAATAGTGGTTGAAGATGGTAAAAAGATTTGTGAAGAATGTCTGATAAAGTTGGACATGATTTACAATGTTATGACTGAAGTTCTGAGAAACAACAAGGATTATGATTTGCATTTGAGgCGCTTCGATTCGGTGAAAAAAGACTGCAATAAAAATACTGAGGTATTTGTAGAAGTAAAACTAGAAGATACATTTCCCGATAACGATGAGTCAATTAAAGACGAGGTTGAAACGGAATTAGAAAACCCAAATGCTATAAAGTCAGAAAATGAAGATATTGCTGCAGAAAAAGAAATCGAATCCTGTTCATCTCCAGGAGTTGAGGAGAAGGAAACATTTAacgaacctaaaaaaaatcggtcaaaATACAAGAAAAGAAATGGTAAAAAACCTGATACAAAACGGGAAATATGTCGTGTTTGCGgaataaaagttaaaagtttAGATGACCATTTTGTCGAtcattatgaaataaaattggaatGTGACCATTGCCCAGGATTGGCTTTCAAAACACTGCTAGACCTGAACAATCACTTGGAGATACATTCGTGTTCGCTGAAAACAAGATGCAACTACTGTTACCGTAGATTCTATTTAGAAGGGGCAAAACTGCATCATTTTGGAGAGCATAATAGAGAAGAAATTGAAGCCGCCAAACAGAGAAAAAAACCTCGTATTATAAATGCGCCCTGCACCCATTGTGGGAAGGTTTTCGCAACACAAAATCTGCTTAAATCACATGAAAAAAGATTGCATCGTCCCGACTTGGGAGTCTTCTGTCAAATCTGTAATAAACGATGTCTGACAAAAACTCTGTTAAAAGAGCATATGCGATACCATTTGAATGAAAAACCTTTTATTTGTGAATACTGTGGTAAAGGGTTCCGCACGAATATCCATTGCAAGGCACATATTCGTGTTCATACGAACGAACTTCCATATCACTGTAATGACTGCAATCGCGATTTTAGATCAACAAGCTGGCTAAACCGACATAAAACAGCTAAAGGATGCGCTCCTGAAAATGCAAAGAAATTCAAATTACGTTCTAAAACCGATAATGATTCAATTGAAAAACCTATGAATTGCTCGCTTTGCACCGATACATTTGATGAGGCAGCAATGTATCAGGCGCACGTTGAAGAAAAACATCCTTCAGAATGTTACAAATGTGGTTATTGCGAGGAAAAGCTTGAAAGATTTGACGAATATCAAATTCATCAGAAAACTgaacattcaaattcaaaagaaaatatggACGAGGTCGAGTTCTATCTACCTTGCCCTCATTGTAATAAAGTGTGCCATGATAAAAAGAAGTTCATTGCACATCTCTATTACGTGTTGAAGCAAAAACAGTCTATTGCTCACAAATGTATGGATTGTGAAAAAGAGTTTTCATTTAGAGCTAATTTGGAAAGACATATTACTGTTGTCCATTTGAAGAAACGGGAACATGAATGTGACATTTGCAATAAGACCTTCGGACAAATTGGGTCTATGCGGACACACCGTCGAACACACACAGGAGAAAAACCATTTTCTTGTAAAATTTGTAATTGCTCCTACGGCGACTACAGCACATTATTTAAACATAATAAGAAACATCatgcttaa
- Protein Sequence
- MGTEIGEKRVLFKNKIIDLNKICRLCIKESSPLYCVEGKINDEDWKIAQVISICYKIVVEDGKKICEECLIKLDMIYNVMTEVLRNNKDYDLHLRRFDSVKKDCNKNTEVFVEVKLEDTFPDNDESIKDEVETELENPNAIKSENEDIAAEKEIESCSSPGVEEKETFNEPKKNRSKYKKRNGKKPDTKREICRVCGIKVKSLDDHFVDHYEIKLECDHCPGLAFKTLLDLNNHLEIHSCSLKTRCNYCYRRFYLEGAKLHHFGEHNREEIEAAKQRKKPRIINAPCTHCGKVFATQNLLKSHEKRLHRPDLGVFCQICNKRCLTKTLLKEHMRYHLNEKPFICEYCGKGFRTNIHCKAHIRVHTNELPYHCNDCNRDFRSTSWLNRHKTAKGCAPENAKKFKLRSKTDNDSIEKPMNCSLCTDTFDEAAMYQAHVEEKHPSECYKCGYCEEKLERFDEYQIHQKTEHSNSKENMDEVEFYLPCPHCNKVCHDKKKFIAHLYYVLKQKQSIAHKCMDCEKEFSFRANLERHITVVHLKKREHECDICNKTFGQIGSMRTHRRTHTGEKPFSCKICNCSYGDYSTLFKHNKKHHA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -