Mcic006611.1
Basic Information
- Insect
- Mochlonyx cinctipes
- Gene Symbol
- L
- Assembly
- GCA_001014845.1
- Location
- JXPH01039511.1:3755-10258[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 1.8 73 4.3 0.9 13 23 6 16 2 16 0.89 2 16 1.6e-05 0.00065 20.2 0.3 1 23 22 44 22 44 0.98 3 16 0.079 3.3 8.5 3.5 1 23 145 168 145 168 0.98 4 16 0.036 1.5 9.6 0.2 1 23 294 316 294 316 0.96 5 16 0.023 0.96 10.2 0.9 1 23 325 347 325 347 0.95 6 16 0.00035 0.014 16.0 1.1 1 23 355 379 355 379 0.87 7 16 0.0074 0.31 11.8 0.3 1 23 384 407 384 407 0.93 8 16 0.0016 0.068 13.8 3.3 1 23 414 437 414 437 0.98 9 16 0.005 0.21 12.3 1.6 1 23 469 491 469 492 0.96 10 16 5.2 2.2e+02 2.8 0.3 1 23 640 664 640 664 0.87 11 16 0.00078 0.032 14.9 0.4 2 23 673 695 672 695 0.96 12 16 0.0046 0.19 12.4 0.1 1 23 701 723 701 723 0.98 13 16 1.1 45 5.0 3.7 2 23 731 752 731 753 0.94 14 16 1.5 60 4.6 0.2 2 23 843 864 842 864 0.93 15 16 0.00038 0.016 15.8 0.3 1 23 874 896 874 896 0.98 16 16 0.12 4.9 8.0 0.8 1 23 903 925 903 925 0.94
Sequence Information
- Coding Sequence
- ATGTCAATTAACTACCTTGACCACTTGAAAATTCACATGAAGACACACGATAACCAAAAGCCATTCCAGTGCACGATTTGTAATCGAGGCTACAACACCGCAGCCGCATTGACGTCGCATATGCAGAACCATAAAAAACAACTGGCCCTTACCGGAAGCCCAAATATAACGTACAGTCCTCGATCTACAAGCTCGATATCCAGCAATGCGTCGGGGGGTCAGAAAAGGAAATTTTCCGCATACGAACAGCAGCAAATGCTATTGAACAATCGTgctaaatttcttaaaaacggaGAGTTAGCTTGTATGTACTGCACAAAATCAGACTTCGTGTCATTAGAACAGCTAGGAACTCACGTCCAAGCCATGCACAGCAACATTATAGAAGGAAACACTCTGCCCTCGTCCAATGATCAACTTTCATTCCACCCGTTCCAATGCGAATTTTGTACAATGAAATTTCCTTCAGTTCAACTAATGTTTCATCATTTAAAAACTACTCACCTAGATCGAATCAATAGCCCAAACACTTATCTAGAACAGTTTAATCGTAATTTAATGAGTACGTACTCATACTACAACAACAATGTTGATGAAAAAAGAGAATTATCAGAAAACATAAAAGTTGAAGCAAAATCTCCTGAAAATGAAGAGAAACATGAAAATGGAGCAGAAGAAGATTTagcaaaaaccataaaattggaaaataaagaagaaaacgaCGAGGTTCCAGCTGGAGAACAAATGACTCCAACCGATTTGAGCCAACCAAAATCTAAGCGAATGAAAATGGAGTCGCACGACACAAATTCCTCCCACAGCAATGAAAGTAATTTGAAAATGCCTTCTCCAACAGTTATCCCAACACCACCAGGGGCATATTTATGTAACCAATGTAATGCGGCCCTTCCCGACTTTGAAACATTCCGCGCACATCTTAAAACCCATTTGGACCAAGGCTCAATCACATCGTTCCTCTGCCAACATTGTGGTGTCACTTTAAACGACCAACTAGAATACGAGCGGCATGTGACCACACACTTTCTTGTGACCAACACAGAATATTTATGTCAGAACACTTGCAATAAAACCTTCACCAAGTCTGATGAATTGCAAAAGCATTTGTACGatgcacacacacagacactgTACAAGTGCAACATTTGCAGCGAGATGTTTGATAGCAAAGTTACGATCCAAGTGCATTTCGCTGTTACACATTCTAATGAGATCAAGATATTTAGATGCTCAGCGTGTTCGGAGATATTTAGGACAGAACGTGAGTTTAGGCATCACATTCGTACACGTCACATTAATCCAGGCGCGGTGCAATGCGTTTTCTGTCGAGTCATTTGCTCTTCGGAGCTTGAAATGCATTTCCATTTGGCTGCACATGCTAGAAAATTTAGATGTCCGGCTTGTCCAGAATCATTCCACGTTGAGTTCCTTTTAGACAGACACATTCAAACTCATCATTCCCACAAAGAAGTTTTGAATAATAACAATAGTAACAGCAACAATAATAACGTTGATTACCACCAAATTCACCATCAACAGCCCAATTTCATGGGCAAACAAAATCTCTATGGAGCCTACAACAAATTCTACAATCCACTTCATGTGGATACCCTAACCGGCATTAAACACCCCAACATTTTACATGGATTTTACGATTCAATAAACAAGCGCTACTtggaaaatagtaaaaaaggCTTCATGAGTCCAAGTCTTAAATACAATCATCATCCAGCTTTGAATGGATTGTATTCTCCTGATCAATTGAACAACAACAAGCCAGGACTTTACTCACCGAATTCGATTTTGAATCGTTTTGGTGTCCCACCCGCCGCAACCACCACAGCCACTTCAACTGCCGAGAGCTTGACAACTACAAGCTCTGCTCCCAAAACCTCATTTTATAGTTGTGGAATGTGTGAACGAAATGATTTTAGTACAGAAAACGAGGTACAAACTCATCGTAAAATTGTGCATAATCTTAAAACTGGAGTTAGTTTACGCTGCGCGTACTGCAATGGTGATTTCAGATCTCGAAACGAGCTCGAGAACCACATGAAAATCACCCATAACACAAGCGGAAAGCATAAATGTTTAATCTGTGACGAAATATTCCCATCGCCAGCCGTGTTGGCCGAACACAAGTTGACACATTGCAAAGTTGGTGCTTCCGGACGTTGCTCACATTGTCCGACGACACTTCCGGACATTCAAACATTCAAACAACATTTATCGCAACATCATCATTCGGCGAATGATCAGGATTCATTTCCGATTCAGTGCATTTGCTGTAGGCAGACTTTGAATTCTGACTTTGAAATTAGTCTGCATGCAaaATTCCACACAAAATCATCTGAATCAAACGAGAAAACCTGTGCCCTCTGCTTGGAATCTCTTCCAGCCAATTTAGACACAAAAATCTGTGAAAGCTGTTTGAAGCGTCATAATTTCTCAACAAAGTTGCTGCCTATGaactttatgaaaaataatactaaCGACGACCCAACGATTCAATGCAATTTGTGCAAAAAGTTCATGCCTTCAGCATTGAAGCTTCAGGAGCATTTGATTGACCATACTTTTGCTGGTTGTGAGGAGCGCGGATACGTTTGTTATTTATGTTCGTCTGTATTTACTTCGTCATCTGGACTACAGAGTCACATTAATGAGCACGGACAACCAGCCAAGCCGTACGATTGTAGTCTTTGTGACCAAACATATTTCTTTAGGGCAGAATTGGATCATCATGTTATCGACCATGAAAACGGAAAAATTCCGAAGAAGGAGGAAAGCAGCAGTAAAAAGATTAAGGTTGAGaacgaagaaaataaaacgcCGCCTATTGAGCATAAAAGTGAGCAACTTGTGGAGGAGGAAGAAGAGTATATCGAGGTTGAACATACCGGTGAAAACACAGAAATTAAGAATGAGGTTATGGATACTAGTAGTAACAATATTcctgatgaaaattaa
- Protein Sequence
- MSINYLDHLKIHMKTHDNQKPFQCTICNRGYNTAAALTSHMQNHKKQLALTGSPNITYSPRSTSSISSNASGGQKRKFSAYEQQQMLLNNRAKFLKNGELACMYCTKSDFVSLEQLGTHVQAMHSNIIEGNTLPSSNDQLSFHPFQCEFCTMKFPSVQLMFHHLKTTHLDRINSPNTYLEQFNRNLMSTYSYYNNNVDEKRELSENIKVEAKSPENEEKHENGAEEDLAKTIKLENKEENDEVPAGEQMTPTDLSQPKSKRMKMESHDTNSSHSNESNLKMPSPTVIPTPPGAYLCNQCNAALPDFETFRAHLKTHLDQGSITSFLCQHCGVTLNDQLEYERHVTTHFLVTNTEYLCQNTCNKTFTKSDELQKHLYDAHTQTLYKCNICSEMFDSKVTIQVHFAVTHSNEIKIFRCSACSEIFRTEREFRHHIRTRHINPGAVQCVFCRVICSSELEMHFHLAAHARKFRCPACPESFHVEFLLDRHIQTHHSHKEVLNNNNSNSNNNNVDYHQIHHQQPNFMGKQNLYGAYNKFYNPLHVDTLTGIKHPNILHGFYDSINKRYLENSKKGFMSPSLKYNHHPALNGLYSPDQLNNNKPGLYSPNSILNRFGVPPAATTTATSTAESLTTTSSAPKTSFYSCGMCERNDFSTENEVQTHRKIVHNLKTGVSLRCAYCNGDFRSRNELENHMKITHNTSGKHKCLICDEIFPSPAVLAEHKLTHCKVGASGRCSHCPTTLPDIQTFKQHLSQHHHSANDQDSFPIQCICCRQTLNSDFEISLHAKFHTKSSESNEKTCALCLESLPANLDTKICESCLKRHNFSTKLLPMNFMKNNTNDDPTIQCNLCKKFMPSALKLQEHLIDHTFAGCEERGYVCYLCSSVFTSSSGLQSHINEHGQPAKPYDCSLCDQTYFFRAELDHHVIDHENGKIPKKEESSSKKIKVENEENKTPPIEHKSEQLVEEEEEYIEVEHTGENTEIKNEVMDTSSNNIPDEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -