Mcic004806.1
Basic Information
- Insect
- Mochlonyx cinctipes
- Gene Symbol
- -
- Assembly
- GCA_001014845.1
- Location
- JXPH01040665.1:1185-3215[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.11 4.5 8.1 3.6 3 23 185 206 183 206 0.94 2 13 6.6 2.7e+02 2.5 3.7 2 19 247 264 246 269 0.88 3 13 0.084 3.5 8.5 0.5 2 23 289 311 288 311 0.93 4 13 0.02 0.85 10.4 0.1 2 20 339 357 338 359 0.93 5 13 0.0085 0.35 11.6 2.5 1 23 368 390 368 390 0.85 6 13 1.8 74 4.3 1.4 4 23 408 430 406 430 0.88 7 13 0.93 39 5.2 3.1 1 21 446 466 446 467 0.91 8 13 5.3e-05 0.0022 18.5 1.9 1 23 474 496 474 496 0.97 9 13 8.8e-05 0.0037 17.8 0.2 1 23 502 524 502 524 0.97 10 13 0.00026 0.011 16.3 0.2 1 20 530 549 530 550 0.95 11 13 4.4e-06 0.00018 21.9 1.5 1 23 559 581 559 581 0.99 12 13 0.00047 0.02 15.5 3.5 1 19 587 605 587 609 0.94 13 13 0.001 0.043 14.5 1.6 1 23 615 637 615 637 0.98
Sequence Information
- Coding Sequence
- ATGGAACTATGTAGACTATGTATGAAACCACCTGGAAAAGGAAGTGTCCAAATATTCACACCAATTGGAGAAGTTTTTATAGCAAACATAATTGTAGCTTGTGCCGCGATCGAGATATTAGAAGACGATGGATTACCAACAGGCCTTTGCCAATCTTGTTTCATagacattaaaaatattgtggCTTTCGTACAAAAATGTCGTGAATCTGATGCAAAACTcagaaaaatgctgaaaaatgaaaatgaGAATTACTTTcttgaaattccaaaattacCGAATGTcgatgttgaaataaaaaatgacgaaGCTGATGAAAAAAAgccaattgaaattaaaatagaagAAGTCGTTCCGGAACTTCTGCAGGTGGATATGAAAGAATCTGATTTGTCTGAAAATGAAAACGATGatgataattttcaaaataattctgaTGATTACGATGATGGTTTTAATACTAATTCATCTGATTCAGATGATGAAACTTTACTAGATTTAATGAAGAAGAGCAACGACAGATTGTCTATAATCCCAGTCAAAGGACATCTATGTTGCGGTTGTTTCAGTATGTTCAAATCGTCAAGCAAGCTTGAAGCTCATGCGAAATCAGAACACGTTTCGAAAAACTTTAACCCAAGAAATTACCGAACTTGTATCATTTGTGCTGTAAATTATAGttctgatgaaaagctacgtggCCATATGGAGGTCACGCTATCTCTAAAGAACATTTTAGAGTGTAACGAATGTAAAGATCGATTTCCAAATAAACAGAGCTTTGATAAACATTGCGAGAGAAAACATTCCCAACATAATCTGGATGAAAAGTTGAAGGAAATAGACATAAAAATGAAAGGAATCGTTTGTTGTGGATGCTTGTACGTATTCAAATCCAGAGAGGAAATGCTTCAACATGCTAAACAAGCTCATCCTCCCAAAGAAAAAAAGCCACCAAAAAAACAGCCTGCTAGTAGAAGAGCTCTTAATCGTGCAAATTGTAAATCTTCGATTGAGTGCGCTGGATGTCGTCGTTTCTATAAAAACGAAGATGCCTTACAGAAACATTGGGATTACGTCTCTTCGCTTTACGCGACAGTATATGAGTGTACAGAATGTGGGAAAAGATTTAAATATCGCCACGATGGATATGGACACGTACGCAACCACTCGGTTTTAAAAGTAATGGAGCaacgaaaaaatagaaaagagaaAAGATGTTGCGCCCAAGGATGTTTTCAAATGTTTCAATCCGAAGAGGAATTGATCGATCACGCTCACACTGAACACGTTCTTAATAAAATTCGTAGTGAGGAAGTTTTGTCACGACTACCATTCGAATGTGACGTTTGCTTCAGAAGATGCAAAAGCTTGGAGGCTGTACACAAACACAAGCAGAGAAAATACGGTAGCAAAAGTCATCAATGTACAATTTGTGGATTAGCTTTCCGACATGCGTCTGACGTCAATAAACATGAGCTTAAACATGAAGGGTTACGGCCTTATGCTTGTGATAAATGCCCAAAACAATTCTTCTCCCCATCCGAGTTAGCCCTTCACAAGGAAACGCACGATAAGGCTAAAAAGTTTGTTTGTCAACACTGTGGCTGGGCATTCCTCCGTAAAGCTAATCTGCAGAAGCACGTCATTTGCATACACGACAGTACACCAATGTTCAAATGTACAATTTGCTCGAAGGGGTTCAcactgaaaattaatttgaagaaCCATCTAATGACCCATAAAGGTGAACGACCGCACAAGTGTAAGCATTGTGAAAAAACTTTCACAGATCCGAGCAATAGACGAGTCCACGAATGGAGCCATACTGGGTACAAACCCCATAAGTGCGACCTGTGCACCAGGAGTTTCTTGAGAAAACCTGAGTTGATTAAACACTTGGCTACACATTAA
- Protein Sequence
- MELCRLCMKPPGKGSVQIFTPIGEVFIANIIVACAAIEILEDDGLPTGLCQSCFIDIKNIVAFVQKCRESDAKLRKMLKNENENYFLEIPKLPNVDVEIKNDEADEKKPIEIKIEEVVPELLQVDMKESDLSENENDDDNFQNNSDDYDDGFNTNSSDSDDETLLDLMKKSNDRLSIIPVKGHLCCGCFSMFKSSSKLEAHAKSEHVSKNFNPRNYRTCIICAVNYSSDEKLRGHMEVTLSLKNILECNECKDRFPNKQSFDKHCERKHSQHNLDEKLKEIDIKMKGIVCCGCLYVFKSREEMLQHAKQAHPPKEKKPPKKQPASRRALNRANCKSSIECAGCRRFYKNEDALQKHWDYVSSLYATVYECTECGKRFKYRHDGYGHVRNHSVLKVMEQRKNRKEKRCCAQGCFQMFQSEEELIDHAHTEHVLNKIRSEEVLSRLPFECDVCFRRCKSLEAVHKHKQRKYGSKSHQCTICGLAFRHASDVNKHELKHEGLRPYACDKCPKQFFSPSELALHKETHDKAKKFVCQHCGWAFLRKANLQKHVICIHDSTPMFKCTICSKGFTLKINLKNHLMTHKGERPHKCKHCEKTFTDPSNRRVHEWSHTGYKPHKCDLCTRSFLRKPELIKHLATH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -