Basic Information

Insect: Mochlonyx cinctipes
Gene Symbol: -
Assembly: GCA_001014845.1
Location: JXPH01028891.1:7789-9662[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.73 30 5.5 3.2 3 23 249 269 247 269 0.91

2 10 8.5e-05 0.0035 17.9 0.5 3 23 289 310 288 310 0.96

3 10 1.6e-06 6.5e-05 23.3 2.3 2 23 317 338 316 338 0.97

4 10 5.2e-07 2.2e-05 24.8 0.8 1 23 345 367 345 367 0.97

5 10 0.00013 0.0054 17.3 2.6 1 20 373 392 373 393 0.95

6 10 0.0042 0.18 12.5 0.5 1 23 441 464 441 464 0.98

7 10 0.066 2.7 8.8 1.2 2 21 478 497 477 498 0.91

8 10 6.5e-06 0.00027 21.4 0.8 1 23 506 529 506 529 0.95

9 10 0.00026 0.011 16.3 2.9 1 23 535 557 535 557 0.99

10 10 0.0033 0.14 12.9 4.5 1 23 563 585 563 586 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.73	30	5.5	3.2	3	23	249	269	247	269	0.91
2	10	8.5e-05	0.0035	17.9	0.5	3	23	289	310	288	310	0.96
3	10	1.6e-06	6.5e-05	23.3	2.3	2	23	317	338	316	338	0.97
4	10	5.2e-07	2.2e-05	24.8	0.8	1	23	345	367	345	367	0.97
5	10	0.00013	0.0054	17.3	2.6	1	20	373	392	373	393	0.95
6	10	0.0042	0.18	12.5	0.5	1	23	441	464	441	464	0.98
7	10	0.066	2.7	8.8	1.2	2	21	478	497	477	498	0.91
8	10	6.5e-06	0.00027	21.4	0.8	1	23	506	529	506	529	0.95
9	10	0.00026	0.011	16.3	2.9	1	23	535	557	535	557	0.99
10	10	0.0033	0.14	12.9	4.5	1	23	563	585	563	586	0.95

Sequence Information

Coding Sequence: ATGGAAAACAAAGTGAAGTTAAAGAATAGAATCAGAATAATAGATCCTAATGATATTTGTCGGCTATGCATAACTGAAGCATCTTCAGCTCCACACTATGGTGTAGATGGAAAAATTAACAATGATGATTTAACAATAGCtgaaattattgatatttgCTACAGACTTACGGTAAAAGACAACACTAAAATTTGCCAAGAATGCTTGATAAAGCTGGACATCTGCTACAATATTAAAAAACAAGTTTACCAAAACAATGATGATTACATTTTGCTTTTCAGAGAATCAAGAATCAAGAGAAAAGGAAAAGATTTGGAAAATATCAACTTGATCCCTATAAAAAACGATCCGAGTCCATCAACTGTTGGAAAAGAACCTTCGTCAGTGTCTGCAGAGCCACTTAAAGTAGATGAATATAGACAGGGAGTGCagatcaaaaatgaaataattgaaGAAGAACAAGAAATTACACAAACTTCATTGCCTGAACCTGAAATTAAGacgaaaaaaacatttaatgaaAGCAAAAAGATCTtggcaaaatacaaaaaaagttgtCATGGAAATAGATTACAGAAATGCCAGATTTGCATGATTAAAGTTGAAAGTTTAGTTGAACACTTCGCTAACCATTACGAAATCGAATTGAAATGCGATCACTGTCCTAACTCTTCCATTGATTCGCTACAAGACCTCAATATTCATTTGGCGACCGTACATCTTCGTCATCCTACAATCACTAATTGTAAAGTTTGTAAAAAAAGGTTCTTCCTAAAGTCAGCAAAACTACATCATGTTGCACAGCATACAAATGaagaaattgaatattttaagaaaaaagcttACACTATCATAAACGCCCCCTGCAGTCATTGTGGAAAGATTTTTGCGACAAAAAACCTGCTTATTGGCCATGAAAGAAGAGTTCATGGCCCTGCGATAGAAGTTTCTTGTACAATCTgcaataaacaattttcaaaacaatttaccTTGCGGAAACACATGCGTATCCATTCAAATGCGCGGCCCCCACACGTTTGTGAATTCTGTGGAAAAGGGTTCCGCTCAAAAGACCTTCTCACGATTCACATTCGGGTCCATACCAATGAGTTTCCGTTTCACTGTAACGACTGTAACCGTGATTTTAGATCAAATAGTTGGCTAAAACGCCATAAAACAGCAAAAGGTTGTGCTTTGGGCATCAAGGAATCGTTAAAACTGAAAGAAAGATTTAGGAAACGTTGTTGTCTGTGCAACGACATTTTTCACGATATTCCGTCATATCATGAACACCTTCAACAAGAACATACTTCGATAGCATTTAAATGCGCAGATTGTGAAGAAAAGCTCGACAATTTTGACGAATACAAAATTCATCAGAAAACTGAGCATTCAGATAAAGTGAATGTGAACGATATTAAAGAGTATCTGCCCTGCAATCACTGCTCCAGAGTTTTCCACAAGCGAAAGCCTCTTTATGCGCacgtaaacaaaaaaaaatacaaaaagaaaagCCACACTTGTGAATATTGCCAGAGAGAATTTGcccagaaaaataatttgataagaCACATAGACATAATTcatttaaagaaaaagaaatacaaGTGTGATATTTGTCACAATTCATTTGGACAAGTTGATCAAATGCGGACACATCGTCGAACGCACACGGGGGAAAAACCTTTTTCTTGCAAAATTTGTAATGTTTCGTACGGGGATCACAGTACTTTGTGGAAACACAATAAGAAACATCATGTTTAA
Protein Sequence: MENKVKLKNRIRIIDPNDICRLCITEASSAPHYGVDGKINNDDLTIAEIIDICYRLTVKDNTKICQECLIKLDICYNIKKQVYQNNDDYILLFRESRIKRKGKDLENINLIPIKNDPSPSTVGKEPSSVSAEPLKVDEYRQGVQIKNEIIEEEQEITQTSLPEPEIKTKKTFNESKKILAKYKKSCHGNRLQKCQICMIKVESLVEHFANHYEIELKCDHCPNSSIDSLQDLNIHLATVHLRHPTITNCKVCKKRFFLKSAKLHHVAQHTNEEIEYFKKKAYTIINAPCSHCGKIFATKNLLIGHERRVHGPAIEVSCTICNKQFSKQFTLRKHMRIHSNARPPHVCEFCGKGFRSKDLLTIHIRVHTNEFPFHCNDCNRDFRSNSWLKRHKTAKGCALGIKESLKLKERFRKRCCLCNDIFHDIPSYHEHLQQEHTSIAFKCADCEEKLDNFDEYKIHQKTEHSDKVNVNDIKEYLPCNHCSRVFHKRKPLYAHVNKKKYKKKSHTCEYCQREFAQKNNLIRHIDIIHLKKKKYKCDICHNSFGQVDQMRTHRRTHTGEKPFSCKICNVSYGDHSTLWKHNKKHHV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -