Mcic003913.1
Basic Information
- Insect
- Mochlonyx cinctipes
- Gene Symbol
- -
- Assembly
- GCA_001014845.1
- Location
- JXPH01052040.1:1-2995[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0014 0.058 14.1 1.3 2 23 167 189 166 189 0.93 2 11 0.37 15 6.4 0.8 3 23 238 258 236 258 0.92 3 11 0.026 1.1 10.0 0.1 2 20 271 289 270 291 0.93 4 11 0.0031 0.13 13.0 2.9 1 22 317 338 317 340 0.90 5 11 0.044 1.8 9.3 0.6 1 20 354 373 354 375 0.93 6 11 7.3e-05 0.003 18.1 0.7 1 23 382 405 382 405 0.96 7 11 0.0024 0.1 13.3 1.0 1 23 410 434 410 434 0.97 8 11 9.4e-05 0.0039 17.7 0.1 1 23 438 460 438 460 0.97 9 11 8e-05 0.0033 18.0 1.8 1 23 466 488 466 488 0.98 10 11 4.2e-05 0.0017 18.8 1.0 1 23 494 518 494 518 0.95 11 11 0.0011 0.044 14.4 1.0 1 21 524 544 524 545 0.95
Sequence Information
- Coding Sequence
- attttaaacgCAGAAGACATATTACCAAAACGAATTTGCAGCGAGTGCTTTGAGGCGTTAGAAATTTCGTACGAATTTAAACAGAAATGTATCGAATCAGAGAAAAAGTTTATGAAGAAGTCGTTCATTTTTCCATCCCATTTTCTCAAGGCTTCGTCTGCTAGTTCAgaagttttggaaaataatgtgaATCCCCTCGACGTTTCTGTAGACTGCACTGAAAGTATGGAAGTTTCAACTCCAGAAACCGCACAaaaagcaacttttcctgaagaATGCGATAAGTTGATGAGtgaattaaaaaaagtaaaagcgATCCTTTGGGACGAAGAAAGGGATGAGACTAaagtaaaaaaaccaaaaaaaaagttagacgGAAATGAATCTTGTTCAACAACAGCTTCATTGAGTTCAGAAAGTGTACGAATCGAGTCCGTTGACGGAGATGAATCTTCATCAGTGACAATCAAGTCAAGCAGATCGTTAAAAAATGCTTTGAAATGTTGTGGTTGCgaaaaaagctttcaaaataatGACGACTTGATGCTGCACGCGGAGAGCAGGCACAAAAGAGTAGCGGATactttgaattttaatgatgAAACTGTTCGACAATGTACTGTCTGCTACGAAACGTTCGAGGGAACTTCCTATAGAGCAGCTGGACATGTTGGAGTGATTGGAAAACGATTGAAAATAATCAATGTCCCGTGTTGCGCTTGCGTCTCCTCTTTCAAATCGTACGAGGAGTTGAAAATGCACGCGAAATCACATTTAGATCTTAGAACGGGGAATcctaataatttaattgaatgcgAAATTTGCTTCAGAATATTTAGAAGTCAGCGGACTTATTACCAGCACAGGGTTATTTTGAACAGAAATCGAATCGATCTGGACATGTTTGGGGTGAGAAGGAAGCGAATAGAGATTGAAAAGACGAAAGAATTTCGTTGCTGTGGCTGTAAAGAGGTTTTTATGACTAAAGATGACCTCAAAACTCATTCGACCTTGACCCACGAGTCATTTAGAGACAACAGAAAGGATCAGGCGCTTAGTTTTGAATGTGATATTTGCTTCAAACGTTACGGTAGACATGAAATGCTAGATAATCACAAGCTGCTTCCTTACTTGGTCAAAAAATACGTCTGCGAAGAGTGCGGGGAAAAATTCCCAACCGATCGCTACTTAAAACGTCATGCAAAGTACAAGCATGCAACCTCCAGCCATCGCTGTCCGATTTGCGATGATGAGCGTGTTTTCGTCAAtataaaaagctataaaaagcACATGGACAGTCACTATAAAGTGTACATCTGCACCGTTTGCGGAAAAGAAACGTCTACCAAAAGAAGTCTTGACATTCACATGGTCATACATTCCAAAGAAACTCCGTTCGAGTGTAAATTTTGTGGCAAATTTGTCAAACGCAAGGCGCTTATGACTAGCCACATGAAGCTCCACACAGGCGTCAAAAAGTTCATCTGTAACTTTGAGGGCTGCGACAAGAAATTTGCTCATTCGGGAGATCTTAAAAGGCATGCTATACGTCATAACAATATTTATCCATATACTTGTGAGAATTGCAGGAAGAATTTTATCAGGAAAGGGCTTTACGAGGCGCACAAGAAAAAATGTCCCGGCATGTTAACGACTgagtaa
- Protein Sequence
- ILNAEDILPKRICSECFEALEISYEFKQKCIESEKKFMKKSFIFPSHFLKASSASSEVLENNVNPLDVSVDCTESMEVSTPETAQKATFPEECDKLMSELKKVKAILWDEERDETKVKKPKKKLDGNESCSTTASLSSESVRIESVDGDESSSVTIKSSRSLKNALKCCGCEKSFQNNDDLMLHAESRHKRVADTLNFNDETVRQCTVCYETFEGTSYRAAGHVGVIGKRLKIINVPCCACVSSFKSYEELKMHAKSHLDLRTGNPNNLIECEICFRIFRSQRTYYQHRVILNRNRIDLDMFGVRRKRIEIEKTKEFRCCGCKEVFMTKDDLKTHSTLTHESFRDNRKDQALSFECDICFKRYGRHEMLDNHKLLPYLVKKYVCEECGEKFPTDRYLKRHAKYKHATSSHRCPICDDERVFVNIKSYKKHMDSHYKVYICTVCGKETSTKRSLDIHMVIHSKETPFECKFCGKFVKRKALMTSHMKLHTGVKKFICNFEGCDKKFAHSGDLKRHAIRHNNIYPYTCENCRKNFIRKGLYEAHKKKCPGMLTTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -