Mcic017272.1
Basic Information
- Insect
- Mochlonyx cinctipes
- Gene Symbol
- -
- Assembly
- GCA_001014845.1
- Location
- JXPH01034228.1:248-2863[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 3.6 1.5e+02 3.3 0.4 2 23 216 238 215 238 0.90 2 12 3.2 1.3e+02 3.5 2.3 2 23 245 266 244 266 0.82 3 12 0.0007 0.029 15.0 2.4 2 23 286 308 285 308 0.95 4 12 3.7e-06 0.00015 22.2 0.6 3 23 316 336 314 336 0.96 5 12 0.00036 0.015 15.9 1.2 2 23 343 364 342 364 0.96 6 12 0.00026 0.011 16.3 2.0 1 20 370 389 370 390 0.95 7 12 0.017 0.69 10.7 0.9 2 23 412 434 411 434 0.92 8 12 0.0022 0.092 13.4 1.1 1 23 439 462 439 462 0.98 9 12 0.092 3.8 8.3 1.4 2 20 476 494 475 496 0.93 10 12 2.2e-06 9.1e-05 22.9 0.5 1 23 505 528 505 528 0.96 11 12 8.9e-06 0.00037 21.0 3.4 1 23 534 556 534 556 0.99 12 12 0.0015 0.063 14.0 5.3 1 23 562 584 562 585 0.96
Sequence Information
- Coding Sequence
- ATGtacaagaataaaataatagatCTCAACAAAATCTGTCGGTTATGCATCAAAGAATGGCCAATACTCTTCTCTGCCGCAGGCAGAATTGATAACACCAATTGGCAAATTTCAGAAGTAATCTCGATTTGCTACAGGATTACGGTAGAAGACGACAAACAAATTTGCGAGGAATGCCTAAAAAAATTAGCAATGTTTCACAGCCATAGACTAGAAGTGTTAAAGAATGACGAGGAATATAATTTGCATTTGAGGCAATACGAAAAAAATGCTTCACTTACCGGCAATATTATTGTTCCTGATGCGGAAAAAATAAGTTGCACAAATAATAATACCGAGGATGATCCAAATGTAGAAGTGAAAATAGAGCAAGTACCAAACGACTTTGAAGATTCACTACTGGGCGAGGTAAAAGAAGAAATAGAACACATTCAAGTCGAAGTTAAGATTGAAAGTGAGGATTCTGTCAGCAATTTGAATGAAGAAGACAGcccatcggaaaaaattaaaatgaagaaaaaatcacaaaaatccaaaaaacgaTCTACCAAATTGgctgaacaaaaatttgaaaaatgcaaCATTTGCGCTATCAAAGTTGAAAGTTTGGATGAGCATTTTGTTGGTCATTACGAAATAGAATTAAAATGTGATCATTGTCCGGATTCGGCATACGATACCATTCAAGAACTAAACAGCCACGTGTCCACACATCCTTGGAACGTTAAAAAGATGTGTAAAGTCTGCTCACGAACCTTCTATTTATTGCAAGCAAAACAGCATCATTATGGTCAGCATACAAAGGAAGAAGTTGAAGCAGCTCGAATAAAAAATAGGGTTCGTGTAATAAACACTCCTTGTACCCACTGTGGAAGAATTTTCAAAGACAATTCACAGCGTAATTTACACGAAAAAAGAATGCATGGAATCGGTAAGGGTGTTAATTGCCCAGTCTGCAATAAACGATTTGTAACAAATGGTAGTTTAAAGGCTCATATGCATTGGCATACCACAGATCGACCCTGGGTTTGCGAATACTGTGGCCGAAAGTTCCGATCGAATGTCCTCTGCAAAGCCCACATTCGTCTACACACGAATGAGCTTCCGTATCATTGCAATGACTGTAATCGAAATTTTAGGTCTCAAAGCTGGCTGGACCGACATAAAACAGCAAAAGGATGTGCGGTTGAGAAAAAGGACCGATACAAAATGAAAGAggataaaaaagaaatgaaatgttCTTTCTGCGATACTACATTTGCAAAACCCGCGTGCTATCAAGAACACGTTGAAGAAGAACATCCTTTAGAATCGTTCAAATGTAGTTATTGCGAGGAaaagcttgtaaattttgacgaATATAAAGATCACCAGCAAACCGAACATTCGAATAAAGAGGTGGCAGAGGAAATTGAGTTTTATCTGCCCTGCTTCCATTGTAACAGAGTGTATCATGGCAAACAAAAGCTTATTCGACACTTGTACAATACCAAaagtgcaaataaaaatatttttacctgTAATTTGTGCGATAAACAGTTTTCACGCAAAGTTAATATGGAGAGACACATCGACGTGGTTCATTTGAAAAAGCGGGAATACGAATGTGACGTTTGCCATAagaaatttggacaaaatatgCAACTTCAGACCCATTATCGTACACATACGGGAGAAAAACCGTATTCTTGTAAAATCTGTAATACATCGTATGGGGATCACAGTACTTTGTGGAAACATAATAAGAAACATCATGCTTGA
- Protein Sequence
- MYKNKIIDLNKICRLCIKEWPILFSAAGRIDNTNWQISEVISICYRITVEDDKQICEECLKKLAMFHSHRLEVLKNDEEYNLHLRQYEKNASLTGNIIVPDAEKISCTNNNTEDDPNVEVKIEQVPNDFEDSLLGEVKEEIEHIQVEVKIESEDSVSNLNEEDSPSEKIKMKKKSQKSKKRSTKLAEQKFEKCNICAIKVESLDEHFVGHYEIELKCDHCPDSAYDTIQELNSHVSTHPWNVKKMCKVCSRTFYLLQAKQHHYGQHTKEEVEAARIKNRVRVINTPCTHCGRIFKDNSQRNLHEKRMHGIGKGVNCPVCNKRFVTNGSLKAHMHWHTTDRPWVCEYCGRKFRSNVLCKAHIRLHTNELPYHCNDCNRNFRSQSWLDRHKTAKGCAVEKKDRYKMKEDKKEMKCSFCDTTFAKPACYQEHVEEEHPLESFKCSYCEEKLVNFDEYKDHQQTEHSNKEVAEEIEFYLPCFHCNRVYHGKQKLIRHLYNTKSANKNIFTCNLCDKQFSRKVNMERHIDVVHLKKREYECDVCHKKFGQNMQLQTHYRTHTGEKPYSCKICNTSYGDHSTLWKHNKKHHA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -