Mcic007494.1
Basic Information
- Insect
- Mochlonyx cinctipes
- Gene Symbol
- -
- Assembly
- GCA_001014845.1
- Location
- JXPH01079112.1:491-2879[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.015 0.63 10.8 3.6 2 23 191 213 190 213 0.95 2 15 1.1 47 4.9 0.0 2 14 227 239 226 241 0.86 3 15 0.0076 0.32 11.7 1.5 3 23 264 286 262 286 0.86 4 15 0.036 1.5 9.6 1.7 1 21 302 322 302 323 0.96 5 15 0.18 7.4 7.4 2.0 1 23 360 383 360 383 0.90 6 15 0.04 1.7 9.5 2.3 3 23 437 459 435 459 0.90 7 15 3.7 1.5e+02 3.3 0.2 2 20 474 492 473 494 0.89 8 15 1 42 5.0 1.2 1 23 523 546 523 546 0.90 9 15 0.0063 0.26 12.0 1.0 1 21 559 579 559 580 0.93 10 15 1.9e-06 7.9e-05 23.1 2.3 1 23 586 608 586 608 0.98 11 15 0.0031 0.13 13.0 1.0 3 23 615 635 613 635 0.96 12 15 7.7e-07 3.2e-05 24.3 0.5 2 23 643 664 642 664 0.97 13 15 5.8e-05 0.0024 18.4 1.5 1 23 670 692 670 692 0.99 14 15 3.8e-05 0.0016 19.0 1.0 1 23 698 721 698 721 0.97 15 15 0.73 30 5.5 4.1 1 19 727 745 727 748 0.90
Sequence Information
- Coding Sequence
- ATGGTAGTTTGCAGGCTCTGTACAGATGGTAATGGTAAATTCTATTCAATATGCCACAGTATAAGCCGCGACATTGAATTAACAGAAATGATTAAATTTTCCACTGGCTTAAAAAAGgtcaataaatatgatgggctGTCACAACTGATATGCGAAAACTGTATTCGTACCATGATTGTTTCGTACGACTTTATTATTTTGAGCAAAAGCTCCGATGCCAAATTGAGAAAgctgaaaaagaaaagcaagaACGAAACTGTTACAAGTTATTCGGAGTATCCTACTTGGACAGATAGAATTCTGAGCATTAAAACTGACGAGGATATCGTCTACGAAGCGGAATACCTGGAAGATGAAATTATTAGCATCCCTCCAGACCTGCTACAACGAAATGAAAAAGGAACAAAAGACGAGTTCATTCCAGTCGAATATTTAGACTGTAAAATGGAGAAAATTGAAGAAGTGACCCAAGAAGACAAGGTTGAtgaagaggaagaagaagaagaagaagaacaagCCTCAGATTCTGATTATAGCGCCGAGACAAAGCCAAAAACAGTCAAAAGGAGTGAATGCTGTGGCTGTTCTGCCTCTTTTCCACATCGTAGGCAATTGAAAAAGCATTCTAAAGTAGTACATGAACCGCATAAGGATCTAAATCCTCCAGCAAATAGGCTAGAGTGTAGTATTTGCtggaaaatatttgcaaattatcACGAAGTCGATACAACCCACAAAAAGTATCCGAGCAGAATTCATGTTGTCAACAGTCCCTTCATAATAACATGTTGCGGCAAGAATTGCGATAAAACATTTGACGATAGAGAAACGTTGAAAGAACACGCTCTCCAGGAGCACATTGGAGATAAAGAGGACGTGGAGGAGGATGACTTGATAAATCAGTATGAGTGTGAGTACTGCTTCCGTAAATATCAGACActagaaaaaatgcaaaagcaCCAAATGTATTATGCTAAACGAGATTATGTCCTTGAAAAAAAGAGCagcagaaagaaaaataaatctacaaaagaaaaagaaaatgctGAGAGTGGTGTAGAAGACACTACAAGAGATTATTTATGTTGTGGCTGCACAGCCTCATTTAACACTCAAAGGAGACTCAAAGAACACTCTCAAGAAGTGCACGAGCCAGTGAAGGATAAAAATCCTCCAGAAGAACGTCTGGAATGCACAATTTGTTGCAAAATCTTCAAATCAATGTTCGAAGTCGTAAGCGATGAGCTGCATAAAAGACTTCCTCGAAGAATCAAGAATATCAATAGTAATAAGTTGAACATTTTATGTTGTGGCACAAATTGCGAACGATCATTTGATAATAGAGAAGAATTGCGGGAGCACGCCAAGCATGCGCACATTGACGACAGGGTCGAGGACAGTTACAATGTAGGTCCGATCGAATGCGACATTTGCTTCCACAGATACCCAAATATAGAGAGAATGAGGGCGCATCAAAGCTACTTTTCGAGAATAAACAATCTTCGGAACAAAAAGATGAACAGTTCAAAGGAAGAACTGATTAATCTGCAGCAAACAATAAGAGAATTTCGTTGTTGCGGTTGCGAGGAAGTTCTTCCTACTGAAATACAGCTGATGAGTCATTCCCATCTAACGCACGAGCCTTTTCGTGATTTCCCGGATGAGGGAAAACCGTTTGAATGCAACATTTGCTTTAGACGATTCAAAAACGAGATGTATTTATCGGAGCACAAGCAAAGTCCCTACTCCCAACGGCATAAATGCAACGTTTGTGATAAAGTATTCCCAATGCGATCGTCGTTAAGGACCCACATGAAACTGCATGaagacaataaaataatttgtcacATCTGCtcgaaacttttgaaaaataagcaaAGCTTAAAAGTGCATTTGTTGATTCACGATGACGAGTCTTTGAAATTATCATGCGAAGAATGTGGAAAAATGTTTAGAAGGAAAAAGAATTTAGATGCACATCTTATTACACACTCCGAAGACCGCAAATTCAAATGTTCACTATGCCCAAAGCGATTTAAGGCAAAAACAAACATGTTGCTACACATTCGTTCGCACAAACAAATTAAACCATATAAATGTGCATACTGTGACAAAAGTTATACGTATCCAAGCGATAAAAAACGGCATGAGATTACAGTGCACACAGGAGTCTATCCGTATTCGTGTTCATTTTGTACAAAGGCATATGTCAGAAAGTCGCATTGCCACCAGCACGAAGCGGTGTGTACTAATAGAAATGGACAGTAG
- Protein Sequence
- MVVCRLCTDGNGKFYSICHSISRDIELTEMIKFSTGLKKVNKYDGLSQLICENCIRTMIVSYDFIILSKSSDAKLRKLKKKSKNETVTSYSEYPTWTDRILSIKTDEDIVYEAEYLEDEIISIPPDLLQRNEKGTKDEFIPVEYLDCKMEKIEEVTQEDKVDEEEEEEEEEQASDSDYSAETKPKTVKRSECCGCSASFPHRRQLKKHSKVVHEPHKDLNPPANRLECSICWKIFANYHEVDTTHKKYPSRIHVVNSPFIITCCGKNCDKTFDDRETLKEHALQEHIGDKEDVEEDDLINQYECEYCFRKYQTLEKMQKHQMYYAKRDYVLEKKSSRKKNKSTKEKENAESGVEDTTRDYLCCGCTASFNTQRRLKEHSQEVHEPVKDKNPPEERLECTICCKIFKSMFEVVSDELHKRLPRRIKNINSNKLNILCCGTNCERSFDNREELREHAKHAHIDDRVEDSYNVGPIECDICFHRYPNIERMRAHQSYFSRINNLRNKKMNSSKEELINLQQTIREFRCCGCEEVLPTEIQLMSHSHLTHEPFRDFPDEGKPFECNICFRRFKNEMYLSEHKQSPYSQRHKCNVCDKVFPMRSSLRTHMKLHEDNKIICHICSKLLKNKQSLKVHLLIHDDESLKLSCEECGKMFRRKKNLDAHLITHSEDRKFKCSLCPKRFKAKTNMLLHIRSHKQIKPYKCAYCDKSYTYPSDKKRHEITVHTGVYPYSCSFCTKAYVRKSHCHQHEAVCTNRNGQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -