Mcic011881.1
Basic Information
- Insect
- Mochlonyx cinctipes
- Gene Symbol
- ZNF438
- Assembly
- GCA_001014845.1
- Location
- JXPH01029847.1:1-3645[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.2 50 4.8 1.0 2 23 50 73 49 73 0.88 2 13 4.1 1.7e+02 3.1 4.6 1 23 116 138 116 138 0.97 3 13 0.85 35 5.3 0.4 1 13 174 186 174 197 0.81 4 13 7.2e-05 0.003 18.1 2.4 1 23 210 232 210 232 0.96 5 13 0.00014 0.0058 17.2 6.8 1 23 238 260 238 260 0.98 6 13 0.00036 0.015 15.9 1.4 1 23 266 289 266 289 0.96 7 13 0.0001 0.0042 17.7 1.2 2 23 298 320 297 320 0.94 8 13 0.032 1.3 9.8 0.3 2 23 358 380 357 380 0.96 9 13 0.12 4.9 8.0 2.5 3 23 390 410 388 411 0.94 10 13 3.8e-06 0.00016 22.1 0.5 1 23 415 437 415 437 0.98 11 13 2.7e-05 0.0011 19.5 1.1 1 23 443 465 443 465 0.97 12 13 0.00022 0.009 16.6 0.1 1 23 471 494 471 494 0.96 13 13 0.0024 0.098 13.3 0.3 1 23 500 524 500 524 0.97
Sequence Information
- Coding Sequence
- AGAGATGATCAGGAACCTAAAATAAGAACTGAAGATGAACCACCAGAAATAATGTACATTGAAATGAGTCCAAAGATGCTAGAACTCAATGACGATGACTATATAGAAATAGAGCCCGTTTCTAAATCGACgacaaagaataaaataaaatgttatctcTGCACgaaaccaaaacttttcaacaGTGAATATTACCTAAAAACACATCTCAGTCAACATGTAGCTCAGCTCAGCTGTGAGACTTGTGCATTCCAAACTGATAATGTAGAATTGGTCAACAACCATCTCGCCGAGCACGATCCAAGAGAAACCTATGAATACACTTTGGAacttaaaaattacaattttaaatgCTATCTCTGCAATTCAACACACGAATCAGAAAATCATCTGAAAGATCATCTAGAAACTCACCTGGATTTTCTTCCTTTCAGTTGTAAATTCTGTGAAAACGTAAAAGTATCAACCATGAATGGTGCCAACAAGCACATGAAGCTGCACGATGAGATCGAAAGGCCCTTCAAATGTGCTTATTGTGAAATACGGTTTAAGTACGCTCCTGTAAAGTCAGATCACGAAAACAACATTCACTtgaaaaaaatgacaaataaaATTCCTACGAAAATCCATCAATGTACATATTGtggaaaaacatttaataaatattcaacATTTATTGATCATGAAGCTATTCacaatcaaattaaaaagtATTCTTGCAATAAATGTGATCGGAAATTCACATCCCGATCGAATTGCACACGCCATCAACGTCTCCATACTCCTTACAGGCCGTTTAAGTGCACCAAATGCCCGGCACAATTTAATCAAAAAGGACAATTGGAAATGCACCATGCTGTAAGGCATATCGATTCATCTAACAAAACTCTGCAATGTAGCTATTGCAAGAAATTTTAcgcttcaaaaattttattgactCGTCATATCAAATTCATTCACTCAATTACTAGAAAAATTCCTTCAGCTGCAGGAAAAATTGCTGTAACTGCCACCAAAACCACCACAAAAACCAATGTGGAAAAACAAAGTATTACGTTTTTTGACTTGAATCAGTGCCAATTTTGTGGCGTCTCCTTCATGTATCATCCCGGATTGATCGAACATCTGGAAAAGGAGCATTCTGAAGaggaatttgaatttatattttgtgaacaATGTGGCGCTAAATTCATGAACAATTATCGGTTGACGTTCCATATGAAATACCATCATAATAGGGAATACAAGTGTCAGATTTGCGATAAAACCTTCAAATCTAAAGGGGGGTTGGATGAACATCTTACAGTCCATTCTAAAATAGCACGCTTTGCCTGTGACTTGTGTGAcaccaaattaaaaacaaaaaaaaatctcatccgGCATCAGAAAATCCATTTAGATATTCGAAATTTCCCATGCGATATTTGTGGCCGTGCCTTCCGCGCGCGCATCCAGATGCAAACTCATAGACGCGGCGTCCACACAAAAGAAAAACCTTTTCCATGCCCGTATCCGAATTGTGAACAAATGTTTGGAGACCGTGGATTGCTGAGCAAGCAtaaaaagaaacatttaaatgaaatgaaatga
- Protein Sequence
- RDDQEPKIRTEDEPPEIMYIEMSPKMLELNDDDYIEIEPVSKSTTKNKIKCYLCTKPKLFNSEYYLKTHLSQHVAQLSCETCAFQTDNVELVNNHLAEHDPRETYEYTLELKNYNFKCYLCNSTHESENHLKDHLETHLDFLPFSCKFCENVKVSTMNGANKHMKLHDEIERPFKCAYCEIRFKYAPVKSDHENNIHLKKMTNKIPTKIHQCTYCGKTFNKYSTFIDHEAIHNQIKKYSCNKCDRKFTSRSNCTRHQRLHTPYRPFKCTKCPAQFNQKGQLEMHHAVRHIDSSNKTLQCSYCKKFYASKILLTRHIKFIHSITRKIPSAAGKIAVTATKTTTKTNVEKQSITFFDLNQCQFCGVSFMYHPGLIEHLEKEHSEEEFEFIFCEQCGAKFMNNYRLTFHMKYHHNREYKCQICDKTFKSKGGLDEHLTVHSKIARFACDLCDTKLKTKKNLIRHQKIHLDIRNFPCDICGRAFRARIQMQTHRRGVHTKEKPFPCPYPNCEQMFGDRGLLSKHKKKHLNEMK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -