Mcic004288.1
Basic Information
- Insect
- Mochlonyx cinctipes
- Gene Symbol
- zfh1
- Assembly
- GCA_001014845.1
- Location
- JXPH01037544.1:1-4053[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1e-05 0.00042 20.8 1.5 1 23 25 47 25 47 0.98 2 12 0.00023 0.0097 16.5 1.6 1 23 56 79 56 79 0.97 3 12 1.8 77 4.2 2.6 2 23 107 130 106 130 0.89 4 12 4.5 1.9e+02 3.0 0.4 6 23 139 156 139 156 0.93 5 12 0.0014 0.057 14.1 1.4 1 23 162 185 162 185 0.91 6 12 0.00066 0.028 15.1 0.3 1 23 193 215 193 215 0.97 7 12 0.013 0.55 11.0 2.0 1 23 223 245 223 246 0.94 8 12 0.00014 0.0059 17.2 2.4 1 23 250 272 250 272 0.97 9 12 8.1e-07 3.4e-05 24.2 1.2 2 23 282 303 281 303 0.97 10 12 0.015 0.63 10.8 2.6 1 23 309 332 309 332 0.98 11 12 2.9e-05 0.0012 19.4 0.5 1 23 338 360 338 360 0.97 12 12 0.015 0.63 10.8 4.7 1 23 366 389 366 389 0.97
Sequence Information
- Coding Sequence
- TTCGAAATTCTTCAAGAACTTGCTGACCACTTGAAAGATGAGCACAAGGACATGGTTAAGGAAGGCAATAAGTTCAAATGTGAGAAAtgtgataaaaaatttagaaggaTTGCCTTACTGATAAGCCACAAAAAAATACATGGAAAAAGAGTCCAAGGAcgaaattttgtttgtgaaCTTTGCGATAGAGGATTCGCAAAGTTGTACTATCTGAAGGCGCACAAACATACTATGCATGGTGAGAAAAGCGAAGTTAGAAATGTAGACAAACAGAAGCGCATGGACGATGATGAAACTATTCGAAAAAGTGGAAAAGTTGTTTGCTGCGAATGTGGAAAACATGATTTCCCTTATTTCAAGGATTTGCAAAAACACTTCAGAGAAATCCACAGCCGAACAGGATACATTATTTGCTGTGacaaaaagattttcaaaagatCCATGGTATTGCGCCACATTATGCTTCACGAAAATCCGAACTTATTTCAATGTACAATTTGTGAACGTAAGTTTAGTGAACTAGAACTATTGAAGTTGCATACGGTACATATGCATACGGCCGAAGCAGATAAACGCTACAAGTGTGATCAGTGTGGAGCCTTGTTTGCAAGAATTCAGCAGCTTAAAATGCATATGGGTTACCATGTTCCAGAATCCGAACATAAATTTAGATGCGAGCCTTGTAACCGAAGTTTTGCCACCAGCCTATTTTTGAGCAGGCATAAAATTATTCATCATTCTGTTAAGCATATCTGCGACGTTTGTGCTAAATCGTATGGCCAACATTCAGAATTGAAAAAGCATTTGCTGACGCATGATCCAAATTACGTGCAAGAGAGATTAAAATGCAACTACTGCGAAAAAACATTTGCAAATCCGACTGCCCTTCGTAGGCACACAAACAAACACACTAACTCGACATTGTATCAGTGTGACCTGTGTGATCACAAATCGCCCACAAAGCAAGCTTTTAGTAGCCATAGAAAAAGGGTTCATTTTACTGGCAAAGATTTTGCGTGTACTTTTTGCGAGAAAGCGTTTAAAACTAAAATCACGCTCAgagagCATATTGCAAGTCACACTGGTGAAATATTGTACACATgtgaattttgtccaaaaacatttatttgttACTCGAATTACGTCAAGCATAGGAAAAATATGCATCCAATTGAGTGGTTGGAGGACAAAAAATTAAAGGATCTGGGGAAGAAACCGAGAA
- Protein Sequence
- FEILQELADHLKDEHKDMVKEGNKFKCEKCDKKFRRIALLISHKKIHGKRVQGRNFVCELCDRGFAKLYYLKAHKHTMHGEKSEVRNVDKQKRMDDDETIRKSGKVVCCECGKHDFPYFKDLQKHFREIHSRTGYIICCDKKIFKRSMVLRHIMLHENPNLFQCTICERKFSELELLKLHTVHMHTAEADKRYKCDQCGALFARIQQLKMHMGYHVPESEHKFRCEPCNRSFATSLFLSRHKIIHHSVKHICDVCAKSYGQHSELKKHLLTHDPNYVQERLKCNYCEKTFANPTALRRHTNKHTNSTLYQCDLCDHKSPTKQAFSSHRKRVHFTGKDFACTFCEKAFKTKITLREHIASHTGEILYTCEFCPKTFICYSNYVKHRKNMHPIEWLEDKKLKDLGKKPR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -