Mcic017273.1
Basic Information
- Insect
- Mochlonyx cinctipes
- Gene Symbol
- ken
- Assembly
- GCA_001014845.1
- Location
- JXPH01034228.1:3938-5901[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.2 48 4.9 0.0 2 23 226 248 225 248 0.87 2 12 0.19 7.7 7.4 1.6 2 23 256 277 255 277 0.90 3 12 1.2e-05 0.00048 20.6 1.8 2 23 297 319 296 319 0.96 4 12 0.00089 0.037 14.7 0.6 3 23 327 350 326 350 0.94 5 12 2.3e-05 0.00096 19.7 4.5 1 23 356 378 356 378 0.98 6 12 0.0023 0.094 13.4 2.6 1 20 384 403 384 405 0.94 7 12 0.09 3.7 8.4 0.4 2 23 427 449 426 449 0.93 8 12 0.012 0.51 11.1 0.4 1 23 454 477 454 477 0.97 9 12 9.3e-05 0.0039 17.8 1.5 2 22 491 511 490 514 0.90 10 12 7.8e-06 0.00032 21.1 0.6 1 23 516 539 516 539 0.96 11 12 0.00015 0.0064 17.1 1.2 1 23 545 567 545 567 0.98 12 12 0.0035 0.15 12.8 6.1 1 23 573 595 573 596 0.96
Sequence Information
- Coding Sequence
- ATGAAtaccaaaatatcagaaaataaagATCAGGATAAAGTAATAGACATCAATAAAATCTGTAGGTTATGCATCAAGGAATCGTCTCCGCTCTACTGCGTTCAAGGGAAAATTGGCGATGAAGATTGTGAAATAGCTCAAGTCATTTCGATTTGTTATAGAATCACGGTGGAAGAAGACCAGAAAATTTGTGAGGAATGTCTGGTAAAACTAGACATGTTTTACAGTGTTATAACAGAAGTTCTCAGAAGCAACAAGGAATATGATTTGCTCTTAAGaCTCTTCGAGAAACTAAAGTTGCCCCTAAAGACTATTAACATCCCTGTTAAAGAAAGTGGGGCAAGGTTGGAAAATGTACCGAACAATACAGATACGGTTAAAGTTGAGGTCAAGCTAGAAGAGGGATTAGCACATATCGATCTAGATGAATTTAATGCAGAACCAGAAAACATTGACGAAGAAAGAAGTGTTGATAATGAAGCCATCgaggaggaagaagaagaaatgaAATTAAGTCTTCGGAAAACTAAAAAGAGCAAAACATTTaatgaaagtaaaaaaatattggcgaaatacaagaaaaaaaaatataggaaagtCCAAAAATGCAACATTTGTCGGATAAAAGTTGATGATTTAGATGAGCACTTTGAAGGTCATTACGAAATTGAACTAGAATGTGATTATTGTCCAGAAGTGACATTCGAATCGCTGCAGGAACTAAGCGAACATATGCCTACACATACTAAAACCAATAAGCCCATCAAGTGCAACTACTGCTCCAAAGAATTTTACCTTTTAGCTGCGAAAAGGCATCATTTAGACCAGCATACAATGGCAGATGTTGAAGCCGCCAAGAAGAGAAAAAGGCCACGCATTGTCAACACACCCTGTACTCATTGTGGTAAAATTTTCTCTACAAATAATTTACTTCGAGATCATGAAAGGAGAATGCACCGCCCTGACCTTGGCGTTCTTTGTCAATTATGTGACAATGACAAACGATTTCCTACGAACACTACGCTCAAAGTCCACATGCGCACCGTTCATTCCAACGAGAAACCATTTATTTGCGAGTATTGCGCGAAGAATTTTAAAACGCGACACCATTTGAACTTACACATTCGTGTCCATTCTGATGTCCTACCATTCCATTGCGATGACTGTAATCGAGATTTTAGGTCAACAAGCTGGTTGCATCGCCACAAAACTGAAAAAGGATGCGCGCCAACCAggaaaaatgttaaaagaaaAAACAGAACTTTAGTAAGGAAGATGAAATGTTCTTTCTGTGGTATTAAAGTTGATAACTCTGAAATGTATCAAAACCATGTCGAAAATAAACATCCTTCAGAATGTTACAAATGTGGCTATTGTGAAAAACAGCTCGAGAGCTTTGCAGAATATCAAATTCATCAACAAAATGTGCATTCAGAGGAAGAAACTACAGCTGATATCGGGTACTACCTGCCATGCCCACATTGCGACAGAGTATTCCATGATTCAAGTATGTTGTCCGCGCATTTGAAACAACAAAGGCATATTTTCACGTGTAGCTATTGCTCGAAAGTATTTTCATTTCGAGCTAACATGGAAAGACATATCGATGTTGTGCACCTGAAGAAACGGGCATTCGAATGTGAATTTTGTCATAAAGCATTTGGACAAATTGGTAGCTGGCAGACGCATCTTCGAACTCATACAGGGGAAAAACCGTATTCATGTATGATTTGTAATACCTCGTATGCAGACCACAGCACATTATATAAGCATAAAAAGAAGcatcatatttaa
- Protein Sequence
- MNTKISENKDQDKVIDINKICRLCIKESSPLYCVQGKIGDEDCEIAQVISICYRITVEEDQKICEECLVKLDMFYSVITEVLRSNKEYDLLLRLFEKLKLPLKTINIPVKESGARLENVPNNTDTVKVEVKLEEGLAHIDLDEFNAEPENIDEERSVDNEAIEEEEEEMKLSLRKTKKSKTFNESKKILAKYKKKKYRKVQKCNICRIKVDDLDEHFEGHYEIELECDYCPEVTFESLQELSEHMPTHTKTNKPIKCNYCSKEFYLLAAKRHHLDQHTMADVEAAKKRKRPRIVNTPCTHCGKIFSTNNLLRDHERRMHRPDLGVLCQLCDNDKRFPTNTTLKVHMRTVHSNEKPFICEYCAKNFKTRHHLNLHIRVHSDVLPFHCDDCNRDFRSTSWLHRHKTEKGCAPTRKNVKRKNRTLVRKMKCSFCGIKVDNSEMYQNHVENKHPSECYKCGYCEKQLESFAEYQIHQQNVHSEEETTADIGYYLPCPHCDRVFHDSSMLSAHLKQQRHIFTCSYCSKVFSFRANMERHIDVVHLKKRAFECEFCHKAFGQIGSWQTHLRTHTGEKPYSCMICNTSYADHSTLYKHKKKHHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -