Mcic016587.1
Basic Information
- Insect
- Mochlonyx cinctipes
- Gene Symbol
- ECU03_0790
- Assembly
- GCA_001014845.1
- Location
- JXPH01009462.1:1589-6079[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0021 0.086 13.5 2.6 2 23 75 97 74 97 0.95 2 15 0.29 12 6.8 1.4 6 23 106 123 106 123 0.98 3 15 0.00024 0.0098 16.5 0.7 1 23 129 152 129 152 0.96 4 15 2.8e-06 0.00012 22.6 0.5 1 23 158 180 158 180 0.96 5 15 6.9e-05 0.0029 18.2 2.0 1 23 256 279 256 279 0.97 6 15 0.00054 0.023 15.4 1.3 2 23 288 310 287 310 0.94 7 15 7.5 3.1e+02 2.3 2.0 2 23 342 364 341 364 0.91 8 15 2.7 1.1e+02 3.7 0.8 6 23 373 390 373 390 0.97 9 15 0.0001 0.0042 17.7 0.5 1 23 396 419 396 419 0.95 10 15 0.00049 0.02 15.5 1.4 1 23 427 449 427 449 0.95 11 15 0.016 0.68 10.7 2.9 1 23 457 479 457 480 0.96 12 15 0.00021 0.0088 16.6 1.2 1 23 484 506 484 506 0.97 13 15 0.002 0.085 13.5 0.8 1 23 543 566 543 566 0.97 14 15 1.4e-05 0.0006 20.3 3.1 1 23 572 594 572 594 0.98 15 15 1.9e-05 0.00078 19.9 1.0 1 23 600 623 600 623 0.98
Sequence Information
- Coding Sequence
- GATAAACAAGTTAACAAGGCAGATAAAGCTAATGAATCAGAACAATCCGATGAATCTGATTCTGAGACCTCAGAAGAAGAACAAGAGGAAGAAGATTCTGTAGACAGCGATGATTCAGACCAACCTCTTATCAAACGAAAGAAATCTTCACCCAAAAAGACTTCCAAAAAGTCTACCAAAAAGGAGAAGGAAGACGATTTAATTCGAAAGGTTTGCCCATTAGAGTGTGACAAgtgtaaaaagaaatttaagactttccaaagtctataTTCGCACTACGAAAAGGAGCATGACTGCAAAGGGTACGCAATGTGCTGTACGAAAAAGTTCTGTAAGAAAAACGAATTACTCGATCACGTGGAACGTCACGAAAATccctcaaaatttaaatgtcaaCAATGCAGCAAGGTTTTGGTTAGCAGCAAATCTCTTCAGAGTCACATAAAGGCGATGCACAACGATGAAAAGCCATACAAGTGCGAGGAGTGTCCAAAATCGTTCATCCGGAAATCGTTGCTGGATCGTCATAAGGGCGTTCATGTTCCAGTAGACAAACGGGAGTTCACTTGCGAATATTGTGCAAAAAAAGACAATTGTAAAGTTGTTTGCGATATTTGTGCAGCACCGTTCAAAACAATGTTCACCATGTTGTGTCATTCCAAGGATGTTCACAAAATGTCAGGTTATTTGTGGTGTTGCGGAAAGAAATTCtttaagaaatatattttgctaGATCATTTCGAGGTTCACACAAATCCTAAAAAGTATCACTGCGAAGAGTGCAATAAAACGTACAATAGCGGATCCAACTTAAAGCAGCATAACAGAATTATTCACGCGAGTATTGAGGAGAAAAAATGGGAATGCAACGATTGTGATAAGAGATTCACAAAAATATCTCGATTACATCAACATGAACGAGCAATCCACGCAGAAAGAGATCCGTCAGCAccagctaaaaaaaataaaacgtccGAAGAATTGGAGGCGGAAGATAAACTGATTAAAGAGTTTTGTAATTTAGTTTGTGAGTTATGCGGACATGATTGCGAAACTCTACTTGAAATTCAAAAGCATTTCAAGGAAAAGCATGACAAGACTGGATATATAACTTGTTGCAATAAAAGATTCTTCAAGAGAGTACGCCTTGTGGAGCACATTCAATTCCACTCAAATCCGAATATGTTCCGCTGCAATCTTTGCAATAAGAATTACACAGACACGGAAGCACTTCAGAACCACATTGCAAATCAACACACTCCGGACGAAGACAAACCCTACAAATGTGACCAGTGTCCGAAAACGTTTATGAAGGAATATCAATTGGTTACGCATTACGGTTATCATGTACCTGAAAGTGAACATGCATTCAAATGTGAACCTTGCAGCAAAACATTTGGATCCCAAGTTTTCTTAGACAGACACAACAGAACGCATCACGGGCCGAAGCACATTTGCGATATTTGTGCTAGAGAATTTAAAAGGATTTCCGAGTTTAAAGTTCACATGTTAAAACATGATGATAATTATAAACCAGATCGTCATCAATGTCCACATTGCTTAACCTGGTTGAAAGACATCAAACATTTCCGAAAACATGTTCGTCATCATCTTGATCagaatgaatatttttgtgatatTTGCGGACAGAAAGCCCCGCATAAAATTGCTTTGCAAAATCATAAAAGAAGAGTGCACTTTACGGAACGGACTCACAAGTGTACATTGTGCGATAAAGCGTTCAAAACTAAACTTAATTTGAAgGAACATACTGCTACCCACACTGGAGAAGCGCTTTACACGTGCTCATATTGTCCCAGAACATTTATTTCAAACGCTAACATGGCTTCACATCGAAAGAAAATGCATCCAAAAGAGTGGATGGAGAATAATTTGAGGAAGAAAATGGACATTGAACTGGGCCTGGAGCCGATTACTAGAATAGGGAGGCCACCTATCAATTAA
- Protein Sequence
- DKQVNKADKANESEQSDESDSETSEEEQEEEDSVDSDDSDQPLIKRKKSSPKKTSKKSTKKEKEDDLIRKVCPLECDKCKKKFKTFQSLYSHYEKEHDCKGYAMCCTKKFCKKNELLDHVERHENPSKFKCQQCSKVLVSSKSLQSHIKAMHNDEKPYKCEECPKSFIRKSLLDRHKGVHVPVDKREFTCEYCAKKDNCKVVCDICAAPFKTMFTMLCHSKDVHKMSGYLWCCGKKFFKKYILLDHFEVHTNPKKYHCEECNKTYNSGSNLKQHNRIIHASIEEKKWECNDCDKRFTKISRLHQHERAIHAERDPSAPAKKNKTSEELEAEDKLIKEFCNLVCELCGHDCETLLEIQKHFKEKHDKTGYITCCNKRFFKRVRLVEHIQFHSNPNMFRCNLCNKNYTDTEALQNHIANQHTPDEDKPYKCDQCPKTFMKEYQLVTHYGYHVPESEHAFKCEPCSKTFGSQVFLDRHNRTHHGPKHICDICAREFKRISEFKVHMLKHDDNYKPDRHQCPHCLTWLKDIKHFRKHVRHHLDQNEYFCDICGQKAPHKIALQNHKRRVHFTERTHKCTLCDKAFKTKLNLKEHTATHTGEALYTCSYCPRTFISNANMASHRKKMHPKEWMENNLRKKMDIELGLEPITRIGRPPIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -