Mcic010443.1
Basic Information
- Insect
- Mochlonyx cinctipes
- Gene Symbol
- -
- Assembly
- GCA_001014845.1
- Location
- JXPH01029088.1:3625-4800[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0063 0.26 12.0 4.1 2 23 3 25 2 25 0.95 2 12 0.03 1.2 9.9 0.2 2 21 38 57 37 58 0.92 3 12 3.1 1.3e+02 3.5 1.2 2 22 72 92 71 94 0.88 4 12 0.0044 0.18 12.5 1.1 2 21 109 128 108 129 0.95 5 12 0.0035 0.15 12.8 5.6 1 23 137 159 137 159 0.98 6 12 1.7e-05 0.00071 20.1 3.6 1 23 173 195 173 195 0.98 7 12 9e-05 0.0038 17.8 1.2 1 23 201 224 201 224 0.94 8 12 7.8e-05 0.0032 18.0 3.1 1 23 231 253 231 253 0.96 9 12 2.9e-06 0.00012 22.5 5.6 1 23 259 281 259 281 0.98 10 12 0.00021 0.0088 16.6 4.1 1 23 287 309 287 309 0.99 11 12 0.0017 0.071 13.8 1.9 1 23 314 336 314 336 0.96 12 12 6.8e-06 0.00028 21.3 0.7 1 23 342 364 342 364 0.98
Sequence Information
- Coding Sequence
- TTGCAAAAATGTTGTGGTTGTGATCATACATTTGAAAGTGAAAAACAGTTAAAAGCACATTCCACAACCGTCCATGAGCCAGAAGTTGAACACGAGGATAAACCAAATAATCAATGCGACATTTGCTTTCGTGCATTTGCAAACAAAAGTATCCTAGGAAAACATAAACGCATTAGTGTCAAGAAATATCAAGATCCTTTCGTGGGGGGGACAAAATGCTGTGGCTGTTATATGGACTTGAAAACAATAGAATTGCTCAAAAAACATTCTGAAGAAATTCATTCGGTCGAGAAAACAATGTTGTTGGATAAACATAAGAAATTGCAATGTGAAATTTGCTTCAAACGATTTTTGTCCAAATCGTCGCTAGACAGACACCAGAAATTTGTTTATGAAAGGCGACAAATATTCACCTGTTcgttttgtgataggaagttTAATAGGAAACATAGTAAaatagctcatgaaaaaagacatttagGGACCGGGAAACCGAAAGTCCATGAAGATAAAAGATACGAGTGCGATGAATGTCATAAGCTCTTTACAGAAAAATCTAATTTGAGAAATCATAAGAAGTTGCATTTGGGAATCAAGCCATTCCAATGTGACATTTGCcagaaattttttgggaaaaagaGCAATTTGGGGATCCATTTGATTCATGTTCATATGGAGACAGTAACAATGCATCCATGCTATCTTTGTACTAAGCAGTTTAAAACGAAGGATAGTTTAAAGTCACACATTGATTCTCACAACCCAAAAAAAATACACGAGTGCCACATATGCCAGGTTAAATTTAGAACTTCAAGCTATTTGAAGCAGCATATTAGAACACACACTGGAGAACAGCCGTACCAATGTGAAATCTGTTCCAGAAAATTTACACACTACAATGGCTATAAACTGCATCAACTAACACATGAGGAGAAAAAGTTTGTCTGTAATTTCTGCCAGAAAAGATTTGGTTCACGCCGAACTCTGGTAATACATGAAAAATTCCATACAGGCGAGCTTAATTATCCCTGTGACGTTTGTGAAAAGAAGTTTGTTAGCCTTATATATCTACAAAAACATCGTAGAAGTCACTTCAAATAA
- Protein Sequence
- LQKCCGCDHTFESEKQLKAHSTTVHEPEVEHEDKPNNQCDICFRAFANKSILGKHKRISVKKYQDPFVGGTKCCGCYMDLKTIELLKKHSEEIHSVEKTMLLDKHKKLQCEICFKRFLSKSSLDRHQKFVYERRQIFTCSFCDRKFNRKHSKIAHEKRHLGTGKPKVHEDKRYECDECHKLFTEKSNLRNHKKLHLGIKPFQCDICQKFFGKKSNLGIHLIHVHMETVTMHPCYLCTKQFKTKDSLKSHIDSHNPKKIHECHICQVKFRTSSYLKQHIRTHTGEQPYQCEICSRKFTHYNGYKLHQLTHEEKKFVCNFCQKRFGSRRTLVIHEKFHTGELNYPCDVCEKKFVSLIYLQKHRRSHFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -