Mcic018860.1
Basic Information
- Insect
- Mochlonyx cinctipes
- Gene Symbol
- -
- Assembly
- GCA_001014845.1
- Location
- JXPH01068261.1:1543-4630[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4e-05 0.0016 18.9 0.2 1 23 121 143 121 143 0.98 2 13 0.091 3.8 8.3 0.1 1 23 149 172 149 172 0.96 3 13 8.4e-05 0.0035 17.9 2.5 1 23 201 224 201 224 0.96 4 13 0.52 22 6.0 0.0 2 23 266 287 265 287 0.94 5 13 0.21 8.6 7.2 1.7 1 23 293 316 290 316 0.91 6 13 0.012 0.5 11.1 1.0 2 19 324 341 323 342 0.95 7 13 0.00015 0.0062 17.1 5.9 1 23 351 373 351 373 0.96 8 13 0.11 4.6 8.1 0.4 2 23 379 400 378 400 0.97 9 13 4.5e-06 0.00019 21.9 0.3 1 23 406 428 406 428 0.98 10 13 0.0015 0.061 14.0 0.1 3 23 436 456 434 456 0.97 11 13 0.00045 0.019 15.6 0.5 3 23 464 484 462 485 0.95 12 13 0.027 1.1 10.0 0.3 1 23 499 521 499 521 0.97 13 13 0.031 1.3 9.8 0.2 1 20 954 973 954 976 0.93
Sequence Information
- Coding Sequence
- ATGCTTGTGGGCGCAGGCTTTTTCCGAATTCAGACAGTAATTGGAATCAATGGCCACGACTTATTGTTCGTAAAGGTAGAGAATcACGACATCTCACCGTCCCCAAGAAAAGGGGCGAAAAGGCTACCACATGACGAAGAAGATCTTTTGCTTAGGATGGACAAAAAAACTCCAACGCCTAAAAAACGCTATAAATCGACCTCGAAAAATAGCAGCCATAAACCGCCAGCAAGAAAACCAGCGGCGACAAAgcgaaaaaataatgaaaatgattaCGTAAATGTGGACGACGAGTTCCGAAATTCATCGACAAACAATGAGAAAAGCCCTCGCTACCCAGTGACCGATGAGAGAAAACCATTCGTTTGCCAGCATTGTGGAGTATCTTTTGCAAGGGAAAAAGCGCTCGCGTCCCACGCCAGAATTCACGGAGGAGACTCGCCATTTGAATGTGACACGTGTGGCGAATTGTTTTGGGACATTGGTATGCTGCAAGAACACATCCGTCAACGTCATGCTGATCAGCCGGACAGCAATTCAGAGTACGAGCCTGTCGCCGAGAATGACTCGGAAGAAAATGAGGATTATTTTGATAAAGATTTTTATTGCGACAGTTGCGGAATTTCTTTCCACCGAAAAGAGCTTTTGAAGCGCCACATCAAGCAATTGCATGGCGTTAAAACAGATGCGGGTTTTGATGAAATCTTTCAAAAAGAAGACGAGGATCTGaatgaggatgatgatgatgaagaggaACACCGGTATAATACGCAAAATCAGGCTCCAAAACCTCTGTGCTGTAATGTTTGTGGCGACACTTTTGCCGAAGCGCTTGATTTGTTGGCCCACGCTGAAGTTCATGCTCGCTACGAGTGCCACAAGTGCCAGTTGTGTGGTGAGACTTTTCTCGATGAACCTTCGATTAAATCACATCTTCGCGATTTGCATTCAAGAGAAATGTCGGACACTTCGTGCGCATTATGCGGTAAACCGTGTAGAAATCATTCAGCTTTGATGAAGCACGCCTGGGAACATTCACGCGAAAGGTCACATTCGTGCTCGAAATGTGGTAAAACTTTCCATAACAAAGCGAGGCTTAAGCGACACATGGTGTCGCATCGGAACAAATCCGTAAAATGTGAAGTTTGTGGTGACGAATTCCCGGATGGGAGAAGTTTGATGAACCATCGTCattctcatacaaaatcaagtcaatttccttgcacgGAATGTGGAAAATCGTTTGGATCACGATCTTCTCAACAGATACATATTCGTATCCACACTGGCGAGCGGCCGTATGGGTGTCGTTATTGCTGGAAAGCTTTTGCAGATGGTGGTACTTTGAGGAAACACGAAAGAATACACACAGGAGAAAAGCCGTACGGATGTTCAGTCTGCCCAAGAGCGTTTAATCAGCGCGTCGTGCTGAGGGAACACATTCGTTCACACCATTCTGCTCCAGACACGAAGCGTGGGACAAACATGAAGCCATATTACTGCCAAGTTTGTTCACAACTGTTTGAAACATCCCTTGAATTGATTCAGCATTTAATCCAGCACAGTGATCTGAATACGGCAATGAAGCGGCAACCGCCAACGGGTCCACGCAAGTATAAACGAAGAAGAAAGTTGAAGCCACACGAGCTGGAAAGGCTGCAGCAAATTAATCAGcttaaaaatgatagtgatgatctAGATTATTCGGATGATGATAATCATCATCAGAATAATGATGATGACGACGATGAACTACTAAAGTCGTCAACAGATCTCCTACACGGATACGGGGAAGGAAGTGGGTCGTCCAGGAAGGCGAAACAGTCGTCACCAAAGTACGATTTCGATTTGTTGCCGCAGAAAAGTACAACATCTTTCAATGACGCTGGAATTAGTTTATTGAGCAACGTTGTGTTAAtcaacaataacaacaaaaagGCAAATCGTGCTGCAGCCCTGGTGGAAGATTCGCCCAAGAAACGTGCCAAACAAATTCTCTCTACGTTCCCATCACTTTCGAATTCGGGCGCCTCTACGTCCCGTGGCGGTCCCAAAATGATTCACACATCGAAAACACGGGTCCAAATATCGGATGGGAAACGGAAAACTAAAACGATGATTACAAAAGAGGTGAAGCAGGAAGTTTTCAGATCACGCTCCACCAAGAACTACGAATTTATTAGTTCGGATAAAATACCGCCAACGGTTCCGCTTTTAGATGACGGAAATGACCACGAACAAAACAGTCAGGACATTGACGTCGTCACCGTGCCGTCAACATCACACAGCCGTGGCGCCGTTAAGCATGGTACAAATTTTGATGAACTTTTGAACCAAAACCTATTGATGGAGATATCGAAGAAGGACAAATATATTGACAAGTACAACAGTGACATTGTGAACGATTTGGAGGAAATTTTAAGGTCGCCAATAAAGAATATTAACAATAGCGCGCCTCCCGCTGTCATTATGGCCACGCCACCAAATTACAGCAGCAATAATAATTACGATGATGATTTCACGGCGGAAAATGTGTACAAAAAGACGCCACATGCACAGCGTCCTCCGGTTCAGAAAAAACTATCCTCTTCTTCTAAAAAGGCGTCGGAGCAGAAGGAATTGTCAAGGCAGGAGCAGAGGATATTGACGGCTAATCTACGAAGTGCCCGGTTGTCTCGTCGGCAACAGCAGCAACAGGAAATGTTTGAGGCAAGGCAAATTCAACAGTTATTAGAACGCGCCGATGAAGAAATTCGACAGCACGTGAAACAGGAACCGCCAGAAGAGCAACAAGGAAAAACACTTGAGGATGAAGGGCCAACAGATCCATTGGCATTGGATGAGACAGATgaaaaagaattcaaatgcGAAATGTGCTCGGCTAGTTTTGATGATCGTACTAAGCTTTTGTTGCACGTACCCAttcacatttaa
- Protein Sequence
- MLVGAGFFRIQTVIGINGHDLLFVKVENHDISPSPRKGAKRLPHDEEDLLLRMDKKTPTPKKRYKSTSKNSSHKPPARKPAATKRKNNENDYVNVDDEFRNSSTNNEKSPRYPVTDERKPFVCQHCGVSFAREKALASHARIHGGDSPFECDTCGELFWDIGMLQEHIRQRHADQPDSNSEYEPVAENDSEENEDYFDKDFYCDSCGISFHRKELLKRHIKQLHGVKTDAGFDEIFQKEDEDLNEDDDDEEEHRYNTQNQAPKPLCCNVCGDTFAEALDLLAHAEVHARYECHKCQLCGETFLDEPSIKSHLRDLHSREMSDTSCALCGKPCRNHSALMKHAWEHSRERSHSCSKCGKTFHNKARLKRHMVSHRNKSVKCEVCGDEFPDGRSLMNHRHSHTKSSQFPCTECGKSFGSRSSQQIHIRIHTGERPYGCRYCWKAFADGGTLRKHERIHTGEKPYGCSVCPRAFNQRVVLREHIRSHHSAPDTKRGTNMKPYYCQVCSQLFETSLELIQHLIQHSDLNTAMKRQPPTGPRKYKRRRKLKPHELERLQQINQLKNDSDDLDYSDDDNHHQNNDDDDDELLKSSTDLLHGYGEGSGSSRKAKQSSPKYDFDLLPQKSTTSFNDAGISLLSNVVLINNNNKKANRAAALVEDSPKKRAKQILSTFPSLSNSGASTSRGGPKMIHTSKTRVQISDGKRKTKTMITKEVKQEVFRSRSTKNYEFISSDKIPPTVPLLDDGNDHEQNSQDIDVVTVPSTSHSRGAVKHGTNFDELLNQNLLMEISKKDKYIDKYNSDIVNDLEEILRSPIKNINNSAPPAVIMATPPNYSSNNNYDDDFTAENVYKKTPHAQRPPVQKKLSSSSKKASEQKELSRQEQRILTANLRSARLSRRQQQQQEMFEARQIQQLLERADEEIRQHVKQEPPEEQQGKTLEDEGPTDPLALDETDEKEFKCEMCSASFDDRTKLLLHVPIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -