Mcic020258.1
Basic Information
- Insect
- Mochlonyx cinctipes
- Gene Symbol
- -
- Assembly
- GCA_001014845.1
- Location
- JXPH01030544.1:1-7040[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.63 26 5.7 0.1 2 23 155 177 154 177 0.95 2 22 0.00053 0.022 15.4 1.2 1 23 181 204 181 204 0.96 3 22 2.8 1.2e+02 3.7 1.1 1 21 210 230 210 233 0.79 4 22 5.5 2.3e+02 2.7 0.1 2 23 319 342 318 342 0.90 5 22 0.0012 0.051 14.2 0.6 2 23 348 370 347 370 0.91 6 22 0.14 5.7 7.8 0.8 1 12 376 387 376 399 0.82 7 22 0.47 20 6.1 0.1 2 23 609 630 608 630 0.96 8 22 0.22 9.3 7.1 3.8 3 23 638 659 636 659 0.96 9 22 0.027 1.1 10.0 4.0 1 23 665 688 665 688 0.92 10 22 1.2 51 4.8 1.1 1 21 706 726 706 729 0.84 11 22 9.3e-06 0.00038 20.9 1.1 1 23 738 761 738 761 0.97 12 22 0.00084 0.035 14.8 0.8 1 19 767 785 767 786 0.98 13 22 0.004 0.17 12.6 0.1 3 23 802 822 801 822 0.96 14 22 0.0017 0.07 13.8 3.9 2 23 826 848 825 848 0.95 15 22 0.85 35 5.3 0.7 1 23 859 882 859 882 0.89 16 22 0.0013 0.053 14.2 4.6 1 23 886 908 886 909 0.94 17 22 0.032 1.3 9.8 0.5 1 23 915 937 915 937 0.97 18 22 0.023 0.94 10.3 0.1 1 23 1032 1054 1032 1054 0.98 19 22 0.00069 0.029 15.0 2.9 1 23 1060 1083 1060 1083 0.91 20 22 0.0097 0.4 11.4 3.0 1 23 1089 1112 1089 1112 0.92 21 22 0.011 0.45 11.3 0.5 2 23 1135 1156 1134 1156 0.94 22 22 0.06 2.5 8.9 3.4 1 23 1159 1182 1159 1182 0.94
Sequence Information
- Coding Sequence
- gATCACTCAATATTTCAACCAGACCTACAAATAAAAGATGAACCAGTCTATTCTAACGATGGAGATGATGTTATGTACGTTAATGATACAAGCACCAGCACTTCATACGTTATCGAAAATGTTCCGGATGAATATGAAACGGAAGAGGCTCATCCCCACCAAAGCTATGGCAATTATGAATTCCAAGATGAAGTAGTGGATGACAGCAATGATCTCGATTACGATTTACAAGAagaagacgaagaagaagaacaaGAAGCAGAGAAAAGTAGTTCATCAAgtaaatacaaatatttacCGGATATTGAAGATGAAGACGAAGCCGCTTCAGATCCAGACTCTGATTACAAACCTTACAAAAAAGACAGAAATAAGACATACACAAgaaccaaaaagaaaaatgcaaGATGTAAAAACCCTGGACGGAATAAAAAGTGGCAGAAGATTTACTTCAATAACATTGAATGTCTCATATGTGAAAACTCGTACAAAGACATAAAAGATTTTGTAATCCATCGCGACACTGACCATTCAGCGCCATTCAAGTGTAAACTTTGTGATGTTACAGCCACAACCTACTCAAATTTGAGGAAACATTTCAtggttttgcataaaaatcacAAGCCCTACAAATGTCGTTCTTGTGATAAATATTTCCCCTACGTTAGTCTGAGGGATATTCATGAAAAAGGTAAACATAGTAAAGAGAGAGTTCAGCAAGTTATGCCGGAGGTAACACCAGAAATTCAGATTAAGATGAAACCTGTTATAAAACCTGTTGTAAAACTGGTAAACACTCCTAAAATATTGATTAAGTCTGAGATGAAGCTGGGAATTCAACCAGAAATTATAACAGATGAAAAAACAGCCCTTAAAACGAATTTCTCATCGCGCGTTAGAACAGCGGAGCCTATTGATCCGGAGCACTTGAAAGAAATCCAGCGTAGAAAAACGGAGTGCTTGATTTGTGATAGCATCACTTTCCTAACGCCTGAAGATTTGAGGCAACACGTTTTGAGCACCCACCAAGACAGCGAGTCAAAATGCAAGATATGCGGGAAAATCACGGCAAATTACAAGACTTTGAATAGACACTACGTGAACATTCATCAGCAGTACAAGCCTTTCAAGTGCCAGTATTGTGATAAAGCTTTTGCTTTTGATAGCGTTAAGAAAATGCACGAAGAAGATACACATTTGAAGACAAGGCCCAGAAAAAGTTATTATGTGaagaagaaaaaatcaccATCGGAATATCACGAAATGCTTACCGGCTACAATATGTCAACCCCAAATTTCCCGCGAATCTCTGAGTTTCCGCAATCTTTCCAACAAACTTCTGAGTTCTCGAGATCGTTTCAGCAAACTTTCCAACACTATCCTAAAAATATTCCGCAAGTGATGCACCCTCAGAGAATGCGCCCTATGATAATGCCGCTTCAAATAATGCGACCTCAGATAATGCGACCACAGATAATGAGACCTCAGATAATGCCGCTGCATTTGATGCGGCCTCAAATCATGCGACCTCAGATGATGCGGCCGCAAATGATGCCTCGAAAGATGCCATATGCTCAGATGATTCCAAAAACTCCCCAAAAAATTCCGCGTTTGATTCCTGAAAATAATGAAACGCAAAACGATTTAGTTTCATCGTCGGACAACAGTCTGGGTGCTATTGATAAAATCATGAAGAATAGCGAAATTTCcttagaaaaaatcaatcaagaaGTTGTAGTTAATAGAGCAATTGAGGCTATTTCCCAACACTACACACCAAGAAGGGCAAGAAAAGAGGTTCGTGATAGAATTATACCTTTGAAAGAGTGTTTGGTGTGCGAATATATTTCCGAAGATAAAGAAGGATTACGTGAGCACACCCTAATGCACTCAACAGAGAATGGGCTGTTTTGCAAATATTGTACGACTAAAATGGCGAGCTATACAAACTTAACGAGACATTATTGTACTGTGCATAAAAACTTTCGCCCCTATTTTTGTCAGTATTGCAATAAATCCTTTTCGTATGGTTACAATTTGACCTGCCATGAAAGAGAAGTGCACAAAAATCAGTTTGCTTTTGGTgcgcaaaagaaaaagtttaaaacaacATCCTACGAGTGCCCAATTTGCGATGACATATTCAAAAGTCGCATCCCATACAATGATCACTGTCGTCTAAAACACTACAAGGAGGGTAATGATGTATTATACAACTGTAAGAACTGTGGGAAACAATTTGCCTCCATCTTCAATCTGACACGACATTACAGAGTAATCCATGAAAAAATTCGTCCTTTCAGTtgtaaaatttgcaacaaatcCTTTGGATTCAAAATGAACTTGCAGCAGCATGACCACGAGTTCCATAACGATGCCCAATCTTCGAATTTCATATCAGATTGTGTGATTTGTGATGCGAAGTTTTCTTCTGAAGGTGACCTTCGGATCCATAGACAAGCACATACCGTGATGAAATGTAAGGGATGCGAAAAAGTCTCCACAAACTACCATAACTTGAAGCGACATTACTACAAATCGCATGTTGATGGAGAAGATGCTGTTGGTGGACAATACGAGTGCTTGATGTGCGATGAAGAGTTTAATACGGGTAGAAAGTTGCGATTCCACAGAATTTCGACGCATCGAGATGGGTTCGCTTGTAAAACGTGCTTTAAAACATTCTCTTCGTACTCCAATTTGTACAGCCACTTTTTGGTTCACCATAAGAAATTTAATCGATTTCGGTGCGATATTTGCCTTGAAGACTTTGTTTGCAAAGGGGATTTAGAAAAGCATATGGAAGAACATGGAACCGAAAATCTAGAAAATcataatcaaattcaaaataattccaCAGCACCGCCAATGGTTGTTATAAAATGTGAACCAGACACTCCGGAATACTTTTTGCAACCTGAAATAACAATCAAAGAAGAGCCTATTGACCTAGAATTTAATGACGATCACCACAATGCTGAATTGAAAGAGGATGGAGAAGAAGAAGAGGCAGAACCAGAAGAAGAAGAGGCAGAACCGGAAGAAGAACCAGAAGATGAAAACCAACGATCAGCAGTTCTAGGTCCAAAAGATTATGAATGTCTAATTTGTGACAGTGTATTAAAATCGTTCCCCGATTTGAAAATTCACCTCGAAACTCACACGGGAAACTCACAATTTCAATGCAAACACTGTGGAATACGAACATCAACCTATAATAACCTTAAAAGACACAACTACATTGTCCATCGTCAAGTGCGCCCTTTCAAATGTCCGTACTGTCCAAAAAGATTCCCGTTTTCATGTGATAGGCGTATTCATATAACGGACAAGCATATGAGAAAGAATTTTAACAAGAATGTTACTGCTAAAAAATGGTTAAGAAAAGATGCGGAAAACTGTGAGTGTTTGGTTTGCGGCACTACGTTCCCAAACAGAGAAGCTACTCGGACTCACGTCCTTATCCACACCGAGTTTGTATGCAGACTTTGTCGAACAAAAACGTCGAACTACAACAATTTGAAAAGACATCATTTATTGGTTCATGAGGTAGTCCATAGATACAATTGCAGTTACTGTCCACGAGGATTTACGTATGACTGTTTTAGGAAACAgcatgaaaaagaaaaacatcatAAACCTCAACTTGGGGAAAATAATATTGTGaag
- Protein Sequence
- DHSIFQPDLQIKDEPVYSNDGDDVMYVNDTSTSTSYVIENVPDEYETEEAHPHQSYGNYEFQDEVVDDSNDLDYDLQEEDEEEEQEAEKSSSSSKYKYLPDIEDEDEAASDPDSDYKPYKKDRNKTYTRTKKKNARCKNPGRNKKWQKIYFNNIECLICENSYKDIKDFVIHRDTDHSAPFKCKLCDVTATTYSNLRKHFMVLHKNHKPYKCRSCDKYFPYVSLRDIHEKGKHSKERVQQVMPEVTPEIQIKMKPVIKPVVKLVNTPKILIKSEMKLGIQPEIITDEKTALKTNFSSRVRTAEPIDPEHLKEIQRRKTECLICDSITFLTPEDLRQHVLSTHQDSESKCKICGKITANYKTLNRHYVNIHQQYKPFKCQYCDKAFAFDSVKKMHEEDTHLKTRPRKSYYVKKKKSPSEYHEMLTGYNMSTPNFPRISEFPQSFQQTSEFSRSFQQTFQHYPKNIPQVMHPQRMRPMIMPLQIMRPQIMRPQIMRPQIMPLHLMRPQIMRPQMMRPQMMPRKMPYAQMIPKTPQKIPRLIPENNETQNDLVSSSDNSLGAIDKIMKNSEISLEKINQEVVVNRAIEAISQHYTPRRARKEVRDRIIPLKECLVCEYISEDKEGLREHTLMHSTENGLFCKYCTTKMASYTNLTRHYCTVHKNFRPYFCQYCNKSFSYGYNLTCHEREVHKNQFAFGAQKKKFKTTSYECPICDDIFKSRIPYNDHCRLKHYKEGNDVLYNCKNCGKQFASIFNLTRHYRVIHEKIRPFSCKICNKSFGFKMNLQQHDHEFHNDAQSSNFISDCVICDAKFSSEGDLRIHRQAHTVMKCKGCEKVSTNYHNLKRHYYKSHVDGEDAVGGQYECLMCDEEFNTGRKLRFHRISTHRDGFACKTCFKTFSSYSNLYSHFLVHHKKFNRFRCDICLEDFVCKGDLEKHMEEHGTENLENHNQIQNNSTAPPMVVIKCEPDTPEYFLQPEITIKEEPIDLEFNDDHHNAELKEDGEEEEAEPEEEEAEPEEEPEDENQRSAVLGPKDYECLICDSVLKSFPDLKIHLETHTGNSQFQCKHCGIRTSTYNNLKRHNYIVHRQVRPFKCPYCPKRFPFSCDRRIHITDKHMRKNFNKNVTAKKWLRKDAENCECLVCGTTFPNREATRTHVLIHTEFVCRLCRTKTSNYNNLKRHHLLVHEVVHRYNCSYCPRGFTYDCFRKQHEKEKHHKPQLGENNIVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -