Mcic008988.1
Basic Information
- Insect
- Mochlonyx cinctipes
- Gene Symbol
- -
- Assembly
- GCA_001014845.1
- Location
- JXPH01087033.1:1104-2620[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.047 2 9.3 0.3 2 23 140 161 140 161 0.97 2 11 0.0054 0.23 12.2 2.5 1 20 167 186 167 188 0.95 3 11 0.014 0.6 10.9 4.4 1 23 195 217 195 218 0.95 4 11 2.2e-06 9e-05 22.9 0.5 1 23 238 260 238 260 0.96 5 11 0.00033 0.014 16.0 0.5 2 23 267 288 266 288 0.97 6 11 9.4e-07 3.9e-05 24.0 1.9 1 23 294 317 294 317 0.98 7 11 0.00081 0.034 14.8 4.0 1 23 323 345 323 345 0.98 8 11 0.0018 0.075 13.7 3.7 3 23 361 381 359 381 0.96 9 11 0.0001 0.0043 17.6 0.3 3 23 387 407 386 407 0.98 10 11 0.00023 0.0097 16.5 0.3 5 23 416 434 413 434 0.96 11 11 3.3e-05 0.0014 19.2 4.6 1 23 440 462 440 462 0.98
Sequence Information
- Coding Sequence
- ATGTGTTTAAAATACGATGAAAATCAAATTATGCTCACACCCGAAATCGAGGAAACCATCAAAAGCCTACTGAACATTGAGATAAAAAAGGAAGATAAACTGACAAAGATTTGTGAAATATGTCTggagaaaataaatacaatgtATGGGTACTCAAAAGAATTCCAAGAGTCTGATGAAactttgaaaatgattttagaTAATATTCAAGAATCTGTGGAAGTAAAGAGTGATGAAGAAGTGAATATTATTCACATAACTTTGAATGATGTGGAAGTTGGCCAGCAGAAAAATCAAAGTGACGATCTCAAAGTTGACGATAATGAAGACATTGCAGAAACTACGCAGGTATTGGAAACCACTGTAATTGAGGGTGAAATGTACGAAAGGATTGAGATAAGTGACAATTTAGCAAACAGATGCTACATTTGCGAAAGTTTCTATGACACAAATGATGTGCTAAATCAACATCTTTTGACTCATAAGGATAAGCTGCCGTATGATTGTGCAAAATGTGGAACAAAATGCCGAACCACAAAGTCATTGAACCGCCACTTAAGCTTTTACGACAAAGATAACGCATTTAAATGCAAATCATGTCAGAAGACATTTCCCATTTTTAGAAATCTGGTACAACATGAAAAATATCATCACTTAAAACCAGATTTATCTAAAACTGGTAATGGTGTGACTGGCGaggaagaaaagaaatttatctgTGAATATTGTGGTAAAGCATTCTCTAgccaaaatttactgaaaagcCACAATAATGTCCACACAGGATTGGCAAAGACACAATGCAAGACCTGTGGAAAAATTTACTCGAGCACAAATGTTCTGGCCCGCCACGAACGGGTTCATACGGGTGAAcgtccatacaaatgtacgttctGTACGAAATCATTCAAACAGAACAGTGAACTAATTGACCACACCCGAATTCTGCATACCAAGGAGGTCCCTTACTCGTGCAGCCTCTGCAACGCCAAATTCTCGACAAGATCATATCTCTATTATCACAAGAAGAAGCATGAGTACGAAAAGAAGCCGGTTTCGAAACCGGAAAAAAATGTCCATTGCCCGCAGTGTGACTACAAATGCTTCAGCCAGGAAACGTTAGCGACGCACATGAAAAGTCACACAGGTGCGAACGCTTGTCCAATTTGTGATAGAAAGTTTACAGTATTCAACAACATGGTTCGACATCTAAAAGTTCACTCGGGCGACAAACCATATGTCTGTGAATGCGGAAAATCTTTCTCGCAGGCTTCCATATTGAAAACGCATCAGAGAATTCATACCGGAGTCAAACCCTACGAGTGTCCACTTTGTTTCAAGAAATTTAGGGACCACAGTACTTTGTATAAACACAAGAGAATACATAGAACTGATGAGTAA
- Protein Sequence
- MCLKYDENQIMLTPEIEETIKSLLNIEIKKEDKLTKICEICLEKINTMYGYSKEFQESDETLKMILDNIQESVEVKSDEEVNIIHITLNDVEVGQQKNQSDDLKVDDNEDIAETTQVLETTVIEGEMYERIEISDNLANRCYICESFYDTNDVLNQHLLTHKDKLPYDCAKCGTKCRTTKSLNRHLSFYDKDNAFKCKSCQKTFPIFRNLVQHEKYHHLKPDLSKTGNGVTGEEEKKFICEYCGKAFSSQNLLKSHNNVHTGLAKTQCKTCGKIYSSTNVLARHERVHTGERPYKCTFCTKSFKQNSELIDHTRILHTKEVPYSCSLCNAKFSTRSYLYYHKKKHEYEKKPVSKPEKNVHCPQCDYKCFSQETLATHMKSHTGANACPICDRKFTVFNNMVRHLKVHSGDKPYVCECGKSFSQASILKTHQRIHTGVKPYECPLCFKKFRDHSTLYKHKRIHRTDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -