Mcic010596.1
Basic Information
- Insect
- Mochlonyx cinctipes
- Gene Symbol
- -
- Assembly
- GCA_001014845.1
- Location
- JXPH01046386.1:9796-11538[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 5.9e-06 0.00025 21.5 2.5 1 23 9 32 9 32 0.97 2 14 0.0062 0.26 12.0 2.5 1 23 65 87 65 87 0.98 3 14 0.48 20 6.1 1.5 1 23 94 116 94 116 0.96 4 14 1.5e-05 0.00064 20.2 1.2 1 23 123 145 123 145 0.97 5 14 0.00024 0.01 16.5 3.3 1 23 150 172 150 173 0.96 6 14 0.002 0.083 13.6 0.1 1 23 179 202 179 202 0.96 7 14 0.014 0.57 10.9 0.4 2 23 209 231 208 231 0.92 8 14 0.0004 0.017 15.8 5.7 2 23 240 261 239 261 0.97 9 14 2.2 93 4.0 0.0 2 19 293 309 292 312 0.77 10 14 5.8e-06 0.00024 21.5 6.2 2 23 330 351 329 351 0.97 11 14 0.052 2.1 9.1 0.8 3 23 358 379 356 379 0.94 12 14 0.0017 0.072 13.8 1.5 1 23 387 409 387 409 0.98 13 14 7.6e-06 0.00032 21.2 3.0 2 23 471 493 471 493 0.96 14 14 0.00021 0.0089 16.6 0.4 2 23 499 521 498 521 0.96
Sequence Information
- Coding Sequence
- ATGCTGTGCCATtcagaagcaaaatttaaatgtgaACTCTGCAATAAATCTTACAAAACGGCaggacatttaaaaaatcacctCGCAAAGTCTCATCCAAAAGCTGAAGGTGAAGCGTCAATGGAAATAGAAATCGAAGTTAAAAATGAAcaagtagaagaagaagaagtttcAGTTGCAGAAAAGCCTATTTTTAAATGTGTGGTCTGTTCAGCAGAGTTTACAAGTCGGAGTGAGCAATTGAGGCACCATCGGCAacataaaaaaaaggaaaaattcttcaaatgCCGAATATGTGCAAAAGAATTTCTAACCATAAAAACACTGCGATTGCATAAGCTGTATCATGATGAAAGCTCGTTCCAATTCAAATGTACAGTTTGCAGTAAGGCCTTCACCACCAAAGCTCAGTTTGAACAACATTCCATGATACATGAAGAGCGGAAGTTTCAATGTGACAAATGCAATACCAAATTCAGAACCAATTCAATATTACTACGTCATTTAGCAACTCATCACGCCGGAAATCAACATTTTGAGTGTCAAATCTGTGGTCTGAAGCTCGCTTTAAATAAATCTCTTCAAAAACATCTTATTGTAGTTCATGGGATTGGAAAAACTATCAAGTGTAATGCGTGTACGAGAGAGTTCTACTCAGAAGACGGTCTAAGAAGACATTCAAATTTGATGCACAGCGCCGACAAAAATGTACAACTAAAATGCCACAAGTGTGGgaagcaaaacaaaaataactacAATTTCAAAAGACACATGCTCACCCATGTCTACGAAAAATGTTCGTTCTGTTCCAAACTAGTCAAAAAATTGCATTTGGACTCACACATTGAGAAGCATAAACAAAGTTTGCTTCAACTAAAATGTCCAGTTTGTCGCAAATTGTTCCCCGAAGCATCGTTCGAAGCACACGTTAATGCAAAAGACTGTACGCCACCGGAAGAGCACAGTAATAAAGAGATCAACTATTCGGTCTGCAAAATTTGCGATAGACACTTTTGCTCCAAAAgcaaattgaaaaatcataTGCGAATTCATACTGGAGACTATATTAATTGTGCACAATGCGATGCTAAATTCACTAGCGCCTATAATCATAACAAGCATGTACAATCTGTCCATACACCGCACGAGAACAAACCATTCGTATGCCATATTTGCGGAAAAGGTAGCGTTTTCAAGAACGTCTTTGAAACTCACCTCAAAACACATGAAGTTGCTAAAATTCGTTGTGAAATTTGCAGTGATATGGTCAAAGGAGAGAAAATGCTCATTTTACATAAGCAAAAGAAGCATAATATTCATTGTGTTGTAAAAGAAGAACCAACAGAACTCTGCAATGAAATTCCTAAGCCACCCTTAGAGCACAATAACAAGAAGGAGATCAGTTCTGCAGTCTGCACTGTTTGCGATAAAAAGTTTAGTTCCAAAAACAGATTGAAGCATCATATGCGTGTTGTTCATACTGGAGATTATATCTATTGTACACAATGCGATGCCAAATTCGCTAGCTCATATAATTATAGCCAGCATATAAAATCGGTTCATGCTCCGCTGGTTAAAATTTGCGGTAAAGATAGCAATTCTAAGAATGAAATACGTTGTGACATTTGCAGTGATCTAGTTGAAAGTGAAAATATGCTTATTTTACACAAGCAAATGAAGCATTGTGCTGTAAAACAAGAACCAACAGACTTCCATGCCGAAGCTCCTAAAGTTGAAActtag
- Protein Sequence
- MLCHSEAKFKCELCNKSYKTAGHLKNHLAKSHPKAEGEASMEIEIEVKNEQVEEEEVSVAEKPIFKCVVCSAEFTSRSEQLRHHRQHKKKEKFFKCRICAKEFLTIKTLRLHKLYHDESSFQFKCTVCSKAFTTKAQFEQHSMIHEERKFQCDKCNTKFRTNSILLRHLATHHAGNQHFECQICGLKLALNKSLQKHLIVVHGIGKTIKCNACTREFYSEDGLRRHSNLMHSADKNVQLKCHKCGKQNKNNYNFKRHMLTHVYEKCSFCSKLVKKLHLDSHIEKHKQSLLQLKCPVCRKLFPEASFEAHVNAKDCTPPEEHSNKEINYSVCKICDRHFCSKSKLKNHMRIHTGDYINCAQCDAKFTSAYNHNKHVQSVHTPHENKPFVCHICGKGSVFKNVFETHLKTHEVAKIRCEICSDMVKGEKMLILHKQKKHNIHCVVKEEPTELCNEIPKPPLEHNNKKEISSAVCTVCDKKFSSKNRLKHHMRVVHTGDYIYCTQCDAKFASSYNYSQHIKSVHAPLVKICGKDSNSKNEIRCDICSDLVESENMLILHKQMKHCAVKQEPTDFHAEAPKVET
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -