Basic Information

Insect: Mochlonyx cinctipes
Gene Symbol: -
Assembly: GCA_001014845.1
Location: JXPH01068665.1:1087-2064[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.00014 0.0059 17.2 2.0 3 23 5 25 4 25 0.97

2 8 1.8e-07 7.7e-06 26.3 2.1 2 23 32 53 32 53 0.98

3 8 0.00014 0.0059 17.2 5.4 1 23 65 87 65 87 0.97

4 8 0.00036 0.015 15.9 1.3 2 23 94 116 94 116 0.93

5 8 2.3e-06 9.6e-05 22.8 1.7 2 23 122 143 122 143 0.97

6 8 3.9e-07 1.6e-05 25.2 0.7 1 23 149 171 149 171 0.98

7 8 5.2e-05 0.0022 18.6 1.1 1 23 177 200 177 200 0.97

8 8 8.2e-07 3.4e-05 24.2 2.3 1 23 208 230 208 230 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.00014	0.0059	17.2	2.0	3	23	5	25	4	25	0.97
2	8	1.8e-07	7.7e-06	26.3	2.1	2	23	32	53	32	53	0.98
3	8	0.00014	0.0059	17.2	5.4	1	23	65	87	65	87	0.97
4	8	0.00036	0.015	15.9	1.3	2	23	94	116	94	116	0.93
5	8	2.3e-06	9.6e-05	22.8	1.7	2	23	122	143	122	143	0.97
6	8	3.9e-07	1.6e-05	25.2	0.7	1	23	149	171	149	171	0.98
7	8	5.2e-05	0.0022	18.6	1.1	1	23	177	200	177	200	0.97
8	8	8.2e-07	3.4e-05	24.2	2.3	1	23	208	230	208	230	0.96

Sequence Information

Coding Sequence: ATGAAACGTATCTGTCATGTTTGCGATGAacgttttaaattgaaaatccaGCTCAAAGACCATCTACGGAACCACGATATTGATACGCAGGAAGAATGCAACATTTGCAAAAagaaatttccaagaaaatacTCCCTTAAGGTGCATATGAAGACCCACATTGATGATTACGACAGAGAAGAGGAAAAACATCATAGCTGCCATATTTGCCAAAAAAGGTTTGATAGGAGCGACCGACTAAAAACTCATTTAGTAACTCACAATATTGGAAAGCATGAAGAATGCAACATTTGCAAAAAGAAATTTACCACCAAAAACATCCTTAAAAGTCATATGACATGGGTCCATAGCAACAACGCGAGAGAATGTCTCATTTGCAAtaagaaattctcaaaaaaatggACCCTTAAGGTGCATATGAGGAGCCATACTAACACATTCCCCTATGCTTGTGAAATTTGCGAAGAAaagttttcaacaaaagaaaACTTCGAGAGGCATATGCTTAAACATACTGGAGACTAtagatttaaatgtaaattttgtgataagccATTTGGAAAGAATGCCTCCTTGCAATATCATTTAATTTCTAATCATGGCACTGAAGAGGACAAACCGCATGCCTgcgatatttgcaaaaaaagatTTGTTACACGTTCCGACCTTAAAGCTCATTTGAAAAGACATGCGCGCAGGGGCGAAGTTAAGGGGGAGCCGGCCGATGCTCAGCCTTCAGTAGAAGATGTTAAGCCCCCTTTAGAAGATTTTACGCCGCCTCTAGGAGATTTGAAGCCACCCCTACTAGCTGAGCGGGGACCAGGGAAAGCTCAGCCTCCTCTAGAAGATGTTAAGCCCCCTTTAGAAGATTTTAAGCCGCCCCTAGGAGATTTTAAGCCATCACTAGTAGCTGAGCGGGGGCCAAGGGAAGCTCAACCTACTCTAGAAGATTGTAAGCCCCCCTTAGAAAATTTTTAG
Protein Sequence: MKRICHVCDERFKLKIQLKDHLRNHDIDTQEECNICKKKFPRKYSLKVHMKTHIDDYDREEEKHHSCHICQKRFDRSDRLKTHLVTHNIGKHEECNICKKKFTTKNILKSHMTWVHSNNARECLICNKKFSKKWTLKVHMRSHTNTFPYACEICEEKFSTKENFERHMLKHTGDYRFKCKFCDKPFGKNASLQYHLISNHGTEEDKPHACDICKKRFVTRSDLKAHLKRHARRGEVKGEPADAQPSVEDVKPPLEDFTPPLGDLKPPLLAERGPGKAQPPLEDVKPPLEDFKPPLGDFKPSLVAERGPREAQPTLEDCKPPLENF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -