Mcic013929.1
Basic Information
- Insect
- Mochlonyx cinctipes
- Gene Symbol
- -
- Assembly
- GCA_001014845.1
- Location
- JXPH01042347.1:1746-3950[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 2.2 92 4.0 2.3 2 23 200 222 200 222 0.89 2 14 0.12 4.8 8.0 0.5 1 21 234 254 234 255 0.92 3 14 4.1e-06 0.00017 22.0 0.6 1 23 260 282 260 282 0.97 4 14 0.77 32 5.4 1.5 2 23 289 311 288 311 0.89 5 14 0.0071 0.3 11.8 1.0 1 21 323 343 323 344 0.95 6 14 0.00067 0.028 15.1 1.8 1 23 348 370 348 370 0.98 7 14 0.07 2.9 8.7 2.2 2 23 379 401 378 401 0.92 8 14 0.0087 0.36 11.6 0.3 1 22 414 435 414 435 0.95 9 14 3.3e-07 1.4e-05 25.5 1.3 1 23 442 464 442 464 0.98 10 14 0.0007 0.029 15.0 3.4 1 23 470 492 470 492 0.97 11 14 3.7e-06 0.00015 22.2 0.6 1 23 499 521 499 521 0.93 12 14 0.0002 0.0084 16.7 3.3 1 23 527 549 527 549 0.99 13 14 2.2e-05 0.0009 19.7 1.3 3 23 557 577 555 577 0.98 14 14 0.00078 0.033 14.8 3.1 1 23 586 609 586 609 0.97
Sequence Information
- Coding Sequence
- ATggattgttttaaaatatgcCGTCTTTGTATGGAGAATTGTGGCGATGAATACATCCCAATTTACAATGAGTTTGATGGTAATCTACTGGTCAGCATTATCATtgaatgtgctcaaattgaGATATTTGAGGACGATATGCTTCCCAAAAACTCTTGCAGAAAATGTGCAGAATCTATGAATGTTGCATTCAATATAATTCAGAGGTGCCGAAAATCAGATGTTACATTGCgatctattttaaaaattgatgattttgaCAATGTCCTCAACAACCCTAGTTTGAATGGTGTTAAAATGGAAGGGCTGAGCGTTTCTGAATATGAGATTTTGCTGTCAGAAACCATAGAGTACGACGAGATGTTGGAAAGTGCAAAAATCGAGTATGCAGATTTTTCCGGAACCAACAAAATATTAGAAGATGGTCTAGCTATACGGGAAAATAACGTTGAAGAACATTTAGATGTACCAGAAGAGAAATCTGAAATACCAGAACAAGAATTCGACGAGAATCAAACTGAGTATTACGAAATAGAAGAGGACCAAACTTTACAAACGACAGAAATCCAattgaaaatagtaaaaaagttTAGGAGAAAATGTTGTGGATgtaaaaaagaatttgaaaatgacCTAAAACTCTTAGAACATTCAAAACTCGAGCATTTTGGAGATAGAGTTGAGAATGGTCACAAACAATTTGAATGTACAGTTTGTTTCAAACGTTTTCTCAACGAAACATTACTGAAGGAGCACAACAGGATAATTTATCGTAaatatttttgtccaatttgtgGAAAGAAATTGATGACTAGGGCAAACTTGAACAACCACATGAAGAATCACCCACgtaaaacaattcaaaaatgtTGTGGATGTCGCCAAGATTTCGAAAGTGAAAAAGAATTATCCCAACATTCAGAATTGGTCCACAAACCGCACAAAACTGATGACAGAAATAAGCCACATGAGTGTGAAATTTGCTTCCGCAGATACCCAACTCGCAAATCGCTGGTCACACATAAAAGACTCGTCCGGCAGCACCAATGTGACACTTGTGGACAAATATTTATGAAGAAAACCTTTTTGGCCACTCACATTTTAACACATCAGAAGGAAAACccaataaagaaaaaatgctGTGGATGTCGAGAAGAGTTTGATACTTCAAAAGAGCTAAAACTACATTCCGAATCCATCCACAGAAATTTGGAGCAACATGAAGATGCATCAAAACCATTTGTATGTGATATATGCTTTAAAAGAGTTGCTTCCAAAGTGTATTTAGCGCAGCATAAGAGGAAAGTGTACAATGAAAAAGTATTTCAATGTCCAACTTGTGGCCGTTCCTTCTCTCGGCCACATGACCTCTCCAATCATGAGCTAACGCACTCCGAAGACACACCATATGAATGTTCTGTTTGTTTTCGGCAGTTCAAGACCAAAGTCTACctcaaaaatcattttaaactCCACACAGACACAGAGAAGAAACATATTTGTGACGAATGTGGGAAGGCATTCAGAACTAAAGACTTGCTCAAGACTCATTTGGTCGGGCATTCAGACGAGCGAAAGTTTCAGTGTTCAGCATGTCCCAGTTctttcaaaagactttattgTTTAAAAAGTCATATGAGAGTGCACACCCGGGAAAAAGCGTTTGGCTGTAATTTATGTAGCAAAAAATATGTTCAATCAACAGACCTAAAGAGACATATGTTAACACACAGTTCAGGGGACAGCAGTAAGCCCTTTCAATGCCACTTTTGCTTGAGAAGATACCCGAGAAAAGATTACCTGAAAATTCACATTGCCAAACAACACACGGCTCTGCAAATCATTGAACTTAACGATAATGTGcagaatcaaaattttacagaGGAAGATGTGAACAGTTTACTGCAATCTGTAAACGTTGATACTTTTACAACAATAAGCTAA
- Protein Sequence
- MDCFKICRLCMENCGDEYIPIYNEFDGNLLVSIIIECAQIEIFEDDMLPKNSCRKCAESMNVAFNIIQRCRKSDVTLRSILKIDDFDNVLNNPSLNGVKMEGLSVSEYEILLSETIEYDEMLESAKIEYADFSGTNKILEDGLAIRENNVEEHLDVPEEKSEIPEQEFDENQTEYYEIEEDQTLQTTEIQLKIVKKFRRKCCGCKKEFENDLKLLEHSKLEHFGDRVENGHKQFECTVCFKRFLNETLLKEHNRIIYRKYFCPICGKKLMTRANLNNHMKNHPRKTIQKCCGCRQDFESEKELSQHSELVHKPHKTDDRNKPHECEICFRRYPTRKSLVTHKRLVRQHQCDTCGQIFMKKTFLATHILTHQKENPIKKKCCGCREEFDTSKELKLHSESIHRNLEQHEDASKPFVCDICFKRVASKVYLAQHKRKVYNEKVFQCPTCGRSFSRPHDLSNHELTHSEDTPYECSVCFRQFKTKVYLKNHFKLHTDTEKKHICDECGKAFRTKDLLKTHLVGHSDERKFQCSACPSSFKRLYCLKSHMRVHTREKAFGCNLCSKKYVQSTDLKRHMLTHSSGDSSKPFQCHFCLRRYPRKDYLKIHIAKQHTALQIIELNDNVQNQNFTEEDVNSLLQSVNVDTFTTIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -