Mcic018417.1
Basic Information
- Insect
- Mochlonyx cinctipes
- Gene Symbol
- -
- Assembly
- GCA_001014845.1
- Location
- JXPH01000117.1:10733-13696[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00014 0.0059 17.2 1.4 1 23 203 225 203 225 0.97 2 10 1.7e-07 7.1e-06 26.4 3.7 2 23 231 252 230 252 0.97 3 10 0.00019 0.0079 16.8 0.8 3 23 259 279 257 279 0.97 4 10 3.5 1.4e+02 3.4 1.7 2 23 291 313 290 313 0.95 5 10 6.6e-05 0.0027 18.2 0.8 1 23 323 346 323 346 0.95 6 10 0.00072 0.03 15.0 3.2 1 23 360 382 360 382 0.96 7 10 4.5e-05 0.0019 18.7 0.3 1 23 388 410 388 410 0.96 8 10 5.1e-07 2.1e-05 24.9 1.0 1 23 416 438 416 438 0.98 9 10 3.2e-06 0.00013 22.4 0.5 1 23 444 466 444 466 0.96 10 10 0.00057 0.024 15.3 9.9 1 23 472 494 472 495 0.95
Sequence Information
- Coding Sequence
- ATGGAAAAGATAGATTTAAGAACCTTTTGTCGGTCTTGTTTGAAACCGGAATCGTTTATGTCGtctatttttgagatttacaaCAATTATTACATGCCCAAGATAATTAACGATTGTACGGGAATAATGATTTATCAAGATGACGgattatcaaatttaatttgcaacacttgtattcaaaaaatcatagaaTCATATGAAACACGTCGCCAGTTCATTAAATCTAATTCGATATTGAGAGAAAATCTTCAGAGTATGACcgaaaatattgagaaattagATGCAGATACAAATTTACTGACAGTTGGTAACATTTTTGAAGACATGTCCATAAAATGGAACGAAAATGATAATATCGATTGTTTGGACAAAATTGTCAAAGAAAATTTGGAACAGTTCAAAATTGATCCAGATATTGAATTATCTCCGGATGATAATTTCGTTGAAATAACGCATTTCAAAGGCGAAGCAGTAGAAAAGGAAGAGGAAAACGAAAAACAAGAAGAACAGAAAAATGAAACAGAAAAGGAGGAGAAAGAAGAAATAACTTTTAAACGatctaaaagaaaagctaaatatgaCGAGCTAACAATGAAAGTACAAAATTATGCATGTTCAAGCtgcaataaaatcttttataatGAAATATCTTTAAAACGACATCAGCAGTATCATAATCAAGAGCAAATAAAATGTCCTATGTgcgagaaaaaatttacacataaaagtaatttaaaaaggCATATCAAATTACATGAAAACGAAGATATGAATTGTGATAAATGTGAAAAGTCGTTTGATAGTCCAAATAAACTCTACGAGCACTTGAAATCACATAAAAAAGACGATAATGAAGAAGAATACGTTATGAAATGCGAGTATTGTTGTGAAGAAACAACTTCGTACTCGGTATTTTTAATACACATGAAAAATGACCACAATATTGATAAAGTTAACGTAAAGGCCTTCAAATGTCACATTTGTGGAATGAATTTTGCTACAAAACAAGGAATGTTGCGTCATATAGATAATattcatgaaaataataaaagaaatatcaGGAAACGTGACAAAAATTACCTTTGTACACAATGTGGAAGCagtttcttttcaaatttccatTTGGTAACACATCTTAGGTCTCATAGTGGAGAACGGCCGTATATTTGTAACGTTTGCGAGAAGGGATTCACACAAGCGTCTGGtttaaaaatgcataaatttgTACATACTGGAGAGCGAAATTATTCCTGTAATGTATGCAATAAAACATTTAGCCAACCAGGACACGTTCGAGAGCATATGATGATACACAGTGAAGATAGACCACATGCCTGTGGCATTTGCAACCGTTCTTTTCGAATTAAAGGAAATTTAACGGCGCATATGATGATTCATAGCGGGAAAAAGAAACATACTTGCCACTATTGTGATAAATCATTTATACAACACACAAAACTGAAGCTTCATATTGAAAAACATCATagctga
- Protein Sequence
- MEKIDLRTFCRSCLKPESFMSSIFEIYNNYYMPKIINDCTGIMIYQDDGLSNLICNTCIQKIIESYETRRQFIKSNSILRENLQSMTENIEKLDADTNLLTVGNIFEDMSIKWNENDNIDCLDKIVKENLEQFKIDPDIELSPDDNFVEITHFKGEAVEKEEENEKQEEQKNETEKEEKEEITFKRSKRKAKYDELTMKVQNYACSSCNKIFYNEISLKRHQQYHNQEQIKCPMCEKKFTHKSNLKRHIKLHENEDMNCDKCEKSFDSPNKLYEHLKSHKKDDNEEEYVMKCEYCCEETTSYSVFLIHMKNDHNIDKVNVKAFKCHICGMNFATKQGMLRHIDNIHENNKRNIRKRDKNYLCTQCGSSFFSNFHLVTHLRSHSGERPYICNVCEKGFTQASGLKMHKFVHTGERNYSCNVCNKTFSQPGHVREHMMIHSEDRPHACGICNRSFRIKGNLTAHMMIHSGKKKHTCHYCDKSFIQHTKLKLHIEKHHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -