Mcic007739.1
Basic Information
- Insect
- Mochlonyx cinctipes
- Gene Symbol
- -
- Assembly
- GCA_001014845.1
- Location
- JXPH01003378.1:1-2814[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0013 0.053 14.2 1.0 2 23 114 136 113 136 0.90 2 13 0.00025 0.011 16.4 8.2 2 23 144 165 143 165 0.97 3 13 0.32 13 6.6 0.1 1 23 168 191 168 191 0.90 4 13 2.8e-05 0.0012 19.4 1.8 1 23 196 219 196 219 0.98 5 13 0.0022 0.092 13.4 1.7 1 23 381 404 381 404 0.94 6 13 5.2e-06 0.00021 21.7 0.5 2 23 410 431 409 431 0.96 7 13 0.00091 0.038 14.6 5.4 1 19 471 489 471 492 0.94 8 13 4.4e-05 0.0018 18.8 0.8 3 23 503 523 501 523 0.97 9 13 6.3e-05 0.0026 18.3 1.4 2 23 529 550 528 550 0.97 10 13 7.7e-06 0.00032 21.2 2.2 1 23 556 579 556 579 0.97 11 13 4.7e-06 0.00019 21.9 2.7 2 23 585 606 584 606 0.96 12 13 1.5e-06 6.4e-05 23.4 2.2 1 23 612 634 612 634 0.98 13 13 2.4 99 3.9 0.5 1 12 640 651 640 652 0.86
Sequence Information
- Coding Sequence
- atGGAGAAGACTCTAAACACAGCTAATAGTTATACGTGCTTGTGTTGTATGAGTAGAGATAATATAATTTTCAGTGTAACCAATGAGGTACAAGTTGGACATTCTACTAAAACTCTCttggaaattctaaaaatcttcCCTTTAGAGCAGATTCCAGAAGAAGAAACACATGTTTGTGAAAACTGCTACAAAGCTATTCTAGAATTCTACAAATTCTACCTCAAAATCCGGTCGTCTTTCGAGCTGTTTGAGAAGCTCAAGACACAACATGACGAGGATTTGAGACTCGTGCAAAAAGAGATTTTCTGTGAAAAATCCTGTGAAAATCAAATGCCAATCGAAtgtgaaatttgtaaaaagaaattcaaaacaaaGCGAGGGTTTGAGATCCACAATCTCTATCAACACGAAAATAAAGATGAAGGAATCGAATGCCATTACTGTAGGAAAAAGTTTAAAACGAGAACGAATTTCACAAACCATCTTCGCCATCACATTGACTTCATTTGCATCTACTGCGATTTCGGGTTTATAAATGAGGAATCTATGATAAAACATGTTGATTCAATGCACAAAGACCTGTTTTACAAGTGCCATATTTGCGATAAAAGCATTCCAATGCGAAAACTCTTAAACCGGCACTTAAAAACGGTTCATAAAGTTAACGAAAAGAATATATTCTGCGGACACTGTAAAGATCGGGCCGTTAAGTTTGTTGAAAGAGGCGTTTTTATTCAACACCTTCAAGAATGTCATTCAAATCCTGAAGCAAATTGTGATTTCCTGGACCAAATGTTTAATTGGGAAGCAGAGTTTCTTGACGAGTATCTCAACGATCCCgaaattttcaagtttaatGAGAAGAATAAGGAGAAATTGAAATGTTCCGAAATAAAACCAAGCCAAAACGAAGAAGCAcaagaaaattttcttaaaaacgtTGACCTGGTTAAAAATAAGACGGTGAAAGATAACGTTTTGAATCCCAACAAAATGATTTTGGAAGAATTCTTGGATGAAGCCTTCGAaaatgatcaaatttggaacaaatatATAGAAGGGGGCGAAGAATATTTGCTGGACGATTATTATTTAGACGATTTCGAGTCTCCAAATCGAAATAAgggtaaaacattaaaatataaatgcCCAAGATGCGTtcgtaaatttgaaaaacagtttGAATTGACTGTTCATTTGGCTCACGACCACGACGAAATGTGCCTTGTCTGTAATGATTGCGGTACGGCCttcaatagaaaagaaaattacgAAAAGCATCGTCAGGAACATCAGAAAGAAAACCAAAAGATTCGGGAAAGTAATATTTTGGAGGCCGAAGAAGCGCTTTCTTTGCAGTCACAAAATAATTTAGAGTACGAAATGAATGAAGaggaaaataaattcattttccaCTGTAAGCTATGTGGGAAAAAGTTTCAGCGACGTTACAATCTCGAAAAGCACAATTGTCTATTCTACAAAGATAAAGGACGACAGCTGGATTGCCAGGATTGTCCAGAGAAATTTAAATCGTCAAAGGAGCTTTATCTCCATCAAAAAACGCATGCCCAGGACAATTTGTATTGTTCGTTGTGCGATAAAAAATTCACTTCAATTTCTGGCCTCAAATACCATTTGAAAAGACACAACGATCTAAAAGCGTTCACGTGCCCATATTGCTCGAAAAAATGTACAGCAAACTCAAATCTGAACGCACACATCAGGAACATGCATTCCGAAAAAATCATACCCTGTCCACATTGCGATCTGAAATTTGCTTCAAAAGATCATCTAACTAAACACCAGAAACTCCATAATGGAATCAAGAGTTTCGTTTGTGAAATTTGTTCTAAGGGGTTTTACCAAAAATCACATTTGACCGACCATTTGAATACGCATGGAACTTTTAAGACGTTCCTTTGTACGATTTGCAATCATTCGTATACGACAAGGGG
- Protein Sequence
- MEKTLNTANSYTCLCCMSRDNIIFSVTNEVQVGHSTKTLLEILKIFPLEQIPEEETHVCENCYKAILEFYKFYLKIRSSFELFEKLKTQHDEDLRLVQKEIFCEKSCENQMPIECEICKKKFKTKRGFEIHNLYQHENKDEGIECHYCRKKFKTRTNFTNHLRHHIDFICIYCDFGFINEESMIKHVDSMHKDLFYKCHICDKSIPMRKLLNRHLKTVHKVNEKNIFCGHCKDRAVKFVERGVFIQHLQECHSNPEANCDFLDQMFNWEAEFLDEYLNDPEIFKFNEKNKEKLKCSEIKPSQNEEAQENFLKNVDLVKNKTVKDNVLNPNKMILEEFLDEAFENDQIWNKYIEGGEEYLLDDYYLDDFESPNRNKGKTLKYKCPRCVRKFEKQFELTVHLAHDHDEMCLVCNDCGTAFNRKENYEKHRQEHQKENQKIRESNILEAEEALSLQSQNNLEYEMNEEENKFIFHCKLCGKKFQRRYNLEKHNCLFYKDKGRQLDCQDCPEKFKSSKELYLHQKTHAQDNLYCSLCDKKFTSISGLKYHLKRHNDLKAFTCPYCSKKCTANSNLNAHIRNMHSEKIIPCPHCDLKFASKDHLTKHQKLHNGIKSFVCEICSKGFYQKSHLTDHLNTHGTFKTFLCTICNHSYTTR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -