Mcic001315.1
Basic Information
- Insect
- Mochlonyx cinctipes
- Gene Symbol
- -
- Assembly
- GCA_001014845.1
- Location
- JXPH01037733.1:10594-12611[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.6 1.5e+02 3.3 4.1 2 23 190 212 189 212 0.94 2 13 0.00041 0.017 15.7 1.7 1 22 224 245 224 245 0.96 3 13 0.0013 0.053 14.2 2.9 1 22 295 316 295 316 0.96 4 13 0.021 0.87 10.4 1.5 2 23 334 356 334 356 0.92 5 13 0.066 2.7 8.8 0.5 2 20 372 390 371 392 0.92 6 13 4e-06 0.00017 22.1 1.6 1 23 399 422 399 422 0.97 7 13 9e-07 3.8e-05 24.1 2.3 1 23 435 457 435 457 0.99 8 13 5.1e-07 2.1e-05 24.9 0.9 2 23 464 485 463 485 0.96 9 13 0.00025 0.01 16.4 3.3 1 23 492 514 492 514 0.96 10 13 6.5e-05 0.0027 18.3 0.4 1 23 520 542 520 542 0.98 11 13 7.8e-06 0.00033 21.1 4.0 1 23 548 570 548 570 0.99 12 13 0.00038 0.016 15.8 0.4 1 23 576 598 576 598 0.96 13 13 0.00021 0.0088 16.6 2.2 3 23 606 626 605 626 0.97
Sequence Information
- Coding Sequence
- ATGAGTGAGCACGACGATGTCCCCACAGCAAGAATTGAAGATGTGACCAACATGTGCCGCGTTTGTATGGATGATTTACAGGGAGAACTTGTATCAATCTTCCAAAGAGTTAGAGAGGACACAATCGCTTGTATGATAATCGCCTGTGGTAGTGTCGATGTCTCAGAAAACGATAATTTACCAAAACAATGTTGTGAAAGATGCATAGAAGGAATGTACATTGCATACTTTATGAGGAAACAGTGTCGAGAATCGGATATAAGATTACgtcaaatttttaatgcaaCTGATCCTGACACTATAAACGAATATGATCCAACTTTTGAAACAGTTACTGTTGAGGAGGAAGAATGTGACAATTTTCTGGAACAAGAGACCGGTGTCGATAACGAAGATACAAGTGATAATAGTACTTATAGCGACTCAGATTCAAGTGAATCTCAAAAAGaagatgatgaaaaaaaagaGGAAAGCGAGGCGGACGAACCTTTTGACATAGAATCCCGAAGTTCTGACCACGAAGAATCTACCAAATATGTTGCCCAATCAAATTTAAGACAAGGCAAAAGGTGCTGTTCATGTCGTCATGATTTTGATACAAACGATCTTTTAATCGAACATTCAAATAAGGTGCATTTGCCTGATAAATCTACTGACACatcaaagaaatttgaatgtGATCTATGCTATAAAAGATACTATAAAAAGACGTCACTAAATCGACATATCAGATCAACTTTCAGTAATATCAGAGCTAGGTACAAGAAAATTATTGGGACGAGGTGTTGCGGATGTAAAGATGATTTCGATTCAGAAGAACTTCTTTTGGAGCATTGCGAAAATGTTCATGGTCCGGACAGAACGCAAGATGAATCAAAACCTTACGAGTGTGAACTCTGTTACAAACGATACATTACGAAAAATTCGTTGCATCGTCACCGTaggaaaaaatacacaaataatACAACATCAAGAGTTTGtagaaaactgaatgtaaacCGGTGCTGTGGCTGTCGAGaagattttaaaacaaaagaagCCCTAGCGAAGCACTCAGAGTCCATTCATCTTCCAGAGAGAACTGAAGCTGGTTCTTCTGACTCAAAACCAATTGAATGTGACGTTTGCTACAACAGATATTCCTCCAAGAGATCTTTACTGCGTCATAAAAGCAGAATATATCTGGAACGAATTTACCAATGTATGCAGTGCGAAAAATCGTTTATTCGACGTTCAAACCTGAACAGTCACGAAAAGAAAGTGCACTTCGGCGTCAAACAGGGTAGTTTACTATCGGGGATTTACCAATGTGTACACTGTGGCAAGACTTTTATGCAGCCATCTACATTGAATAACCACGAAAAaacacatttgaaaaataaaactattgttTGTAGTATTTGCTCAAAAAGATTTTCAAGTAAAGGAAACTTGCAAACCCATATGAAACTTCATAGTGTGACCACAGAAAGTCACAATTGCCATAGTTGCGGAAAAGCGTTTAAAAAAGCTGAATTATTAAAGTCTCATGCGCAATCCCATTTAAAGGAGAAGAAATACGAGTGTAGTATTTGTAATACAAAGTTTAAAACAGCTAATTATCTTGATATACATGCCAGAATTCACACTGGGGAGAAACCTTTTCAATGTTCAAATTGCCAGAAGACTTTTGCTCACAGCTCTGGCTACAGGCGGCACTTGCTCACACATACCGGGTTGAAGCcatttatttgcaaatattgtgATAAAGATTTCGCCAGCCGGCCAAACATGCTAATTCATGAGAAGCTTCATACGGGCGAAAAGAACTCAGCGTGCGATATATGTGGTAAGCAGTTCGTACACTCAAGATATATGAAGAGTCATAGAAGATtacattttaataccaaaaatggAGGTAGCTTGCCCCATGTGTCGAATATTGCTAATCTTCCCCATTTTaatccataa
- Protein Sequence
- MSEHDDVPTARIEDVTNMCRVCMDDLQGELVSIFQRVREDTIACMIIACGSVDVSENDNLPKQCCERCIEGMYIAYFMRKQCRESDIRLRQIFNATDPDTINEYDPTFETVTVEEEECDNFLEQETGVDNEDTSDNSTYSDSDSSESQKEDDEKKEESEADEPFDIESRSSDHEESTKYVAQSNLRQGKRCCSCRHDFDTNDLLIEHSNKVHLPDKSTDTSKKFECDLCYKRYYKKTSLNRHIRSTFSNIRARYKKIIGTRCCGCKDDFDSEELLLEHCENVHGPDRTQDESKPYECELCYKRYITKNSLHRHRRKKYTNNTTSRVCRKLNVNRCCGCREDFKTKEALAKHSESIHLPERTEAGSSDSKPIECDVCYNRYSSKRSLLRHKSRIYLERIYQCMQCEKSFIRRSNLNSHEKKVHFGVKQGSLLSGIYQCVHCGKTFMQPSTLNNHEKTHLKNKTIVCSICSKRFSSKGNLQTHMKLHSVTTESHNCHSCGKAFKKAELLKSHAQSHLKEKKYECSICNTKFKTANYLDIHARIHTGEKPFQCSNCQKTFAHSSGYRRHLLTHTGLKPFICKYCDKDFASRPNMLIHEKLHTGEKNSACDICGKQFVHSRYMKSHRRLHFNTKNGGSLPHVSNIANLPHFNP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -