Mcic015526.1
Basic Information
- Insect
- Mochlonyx cinctipes
- Gene Symbol
- -
- Assembly
- GCA_001014845.1
- Location
- JXPH01014451.1:1-7745[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 2.8e-05 0.0012 19.4 2.5 1 23 15 37 15 37 0.96 2 14 0.00011 0.0046 17.5 2.3 1 23 55 79 55 79 0.91 3 14 0.0025 0.11 13.2 0.2 2 23 85 107 84 107 0.96 4 14 2.1e-05 0.00088 19.8 2.9 1 23 113 135 113 135 0.97 5 14 0.0016 0.065 13.9 1.0 1 23 143 166 143 166 0.97 6 14 3.3e-05 0.0014 19.2 2.0 1 23 173 195 173 195 0.98 7 14 3.3e-05 0.0014 19.2 2.8 1 23 201 226 201 226 0.96 8 14 2.6 1.1e+02 3.8 3.9 1 23 388 410 388 410 0.85 9 14 0.029 1.2 9.9 1.8 2 23 425 448 424 448 0.89 10 14 0.57 24 5.8 0.2 2 23 454 476 453 476 0.95 11 14 0.00081 0.034 14.8 1.7 1 23 482 504 482 504 0.97 12 14 0.00028 0.012 16.3 0.2 2 23 513 535 513 535 0.96 13 14 0.00032 0.013 16.1 0.6 1 23 541 563 541 563 0.98 14 14 8.3e-05 0.0035 17.9 0.4 1 23 569 594 569 594 0.97
Sequence Information
- Coding Sequence
- GAAATAATTGAACACAACAAGAACTACCACAAGGACAGGCCCCACATTTGTGACCACTGTGGTGAAACATTCACCAGAAATCAACAGTATCAGGTGCACATTCAAGGCCATTTCATTGGAAAAGCCAAAGTTGATGAGCAGAAtaagaaaaAAGTCCAAAAGTATAGCTGCAAGACTTGCGATATTTCGTTCAACAACCAGAAGTATTTGGAGAAGCATGTCCAAAAAACTAAACATCAAATCGACGGCGTTGTCTGCGAATTGTGTGGTGCAATATTTATCTCCAACATCAAATTATGTCAACACATGATTCGTGTCCATAAAAATGAAAAGCGTTACACGTGCGAACAttgttcaaaagaattttcccAACGGACAAATTTGGACCGGCATTTACTTTTGCACACCAAAATCATGGACAAGTCTTTCATCTGCGAACATTGTGGTTCGTCATATTTCTCGCAGACGGCTATGCGGGAGCATATAAAAACGGCCCACACAACAAACGAGGTAAAATTTGAATGCAACATTTGCAACAAGTTTTTCGCAGCTAAAAGGTCGCTCAAACGCCATAAACTGACCCACTCTGAAGAGCGTGCGTACCCGTGTACGTACGAGAACTGCAAAGAGTCGTACAAGAATCAATCGCATTTGACTCGGCACCAAAAATCCGCTCACAATCTGGAAGCGGCTCGTCGTGTACAAAAACTGGTCAAGAACGAGAACGGCGAGTATATTCCATTGGAACCTGTACAGGAGCCAAAACcagtgaaaaagaaaaaaccTGCCGAGAAAACGGTGGTCGCGCCAGAGCCAGGCTTCACCGAAAACGTCCCGTGCTACAATTACGATTACGTGGAAGCCCCGCCACATCCACCACAACCACCACCACCACAGCAACCACAGCAACAGCAAATGGCGGCCCCGCCACCCGCTTCAAATTTCATTGTCAACAATTATGGAGAACAGAATATCAACTACGGTAACGAGCCAATGAATAATTTCGAATGGCAGAATTTGGAGCAGAATCTGAACAATGTAATGGGAGCGAATCCTGTTGGATTCATTGAAGGCGGTGAGTTCCAAGAGATGAATAAGGAGCGCCCGGGACCgcatttcattaataataatccGGAAATTAGGGGATATCAAGAGAACGTCTTTATCTGCGAACATTGCGATGAAAGCTTCCTAAACAGCCACTCGCATCAAAACCACGTTCTTGAACATTACAACAAGGACAACAAGGATACAAAAAaaaTGTTGAAGCTCAACTGCAGAACATGCAGCCTCGTCTTCAGCAACCACATCCAGCTGGAGAAGCATGTTCAAAAAACTAATCATCAAATCGATGGATTGGTCTGTGAATTCTGTAGTGCAATATTCATGACGACAGTCAAGCTGAGTCAACATTTGATCAAAAGTCATAAAAatgaaaCTTGGCACACATGTGAACACTGTTCAAAAATCTTTATCGTGAAAGCTGATTTGGACAGGCATTTATTACTACACGCCACATCTCCGGACAAAAGCAACGTTTGTGATCATTGTGGGTCAGCATTTTTCTCGCAGGACGCTTTAAAAGAGCATATCAAAGTAGCACATGCTTCGGACAAAAAGTACGAATGCGACATTTGTAGCAAATTATTCGCAGCTCAACGCTCTTTAAAACGCCATAGACTATCGCACGCCGAGGACGGAGCGTTCCCGTGCCCGATAGAAAATTGTAAAGAGTCGTTTAAGAATCAAACGCTGTTAGCTAAACATAGAAAGATGATGCACGTCGAAAGCGACGTCAGCAAGTCTAAAAAGAAAGGAAACGACCCTAGTGCGCTAATAATACCACCGGTGAACAATAATAATCCGAATATGCCATGCTACGGCGGCTACGACAACAATTTGCCATACAACAGCGTGAACCATCAGTTCGCGGTCCATAGTCCGTCGCACGCCATCAATGCCAACAACTACGGAGACCAAAATCTGAACTACCGGCTAGACCCGAATAGCGAGCATTACACAAACAGTTACGGTTTGCAAGACAATTCGTTTGAGTGGCAGAATCTGGAGATGTGTAATCCGCAAGCAAACAACATTGACCCGGGAATGGCGTCGGCAGCAGCGGCTGCAgcagctaaaaataataaatattaccCAGTGATGGACGTGAATGCTGGAGGGTTTATGAATGTGCAGGACATTAAAAATCAGGATCCACAGCAGCTGATGGAGATAAATAATCAAGAGTTTCTTGGATATCAGGATATTTGGAACTCGAATATGGTAAAGATCGAATATTCTGATGATGTAAATAGTAGTAGCCAAGTCCAGGGTGGTGGCAGCACATACAACAGTATTGGAAATATCCTGACGAATTTAGAATTGATCGGAAATAACagtaattttgaacaaaactttGACATCGTAACATCCCACAGTATTGATCCACAAAAGCAGCATCACTATCAGAAGAATCAGCCGCCATCTAGTATGATGAACGTGGATAATAACCTGGTGAACCATCAACAGTATTTCCAGGACCAACATCACCACCAAAGCCCGCACCAGGGAACCTCACAGCAAATGCAGTACAATAATAGCATGTCTCATCTTCCACCCCCTAATCACCCGCATCCCAGTGCTCACCATCCTCATCCACAGCACCCACATCCACACCCACAGCACCCTCATTCGCATCAACAGCCACCACAGGCTCCGCCACAATCAATGAACCAGTACAGCAATCAGGACATGAGTCAGAATCCCAATCACACCATCACAGACATATCCAAGACAAATAATCTCCAATTTGTGGACAGTTTTACCGAATCTATAGATTATTTGCAACAATCTTTTCAATTTGtataa
- Protein Sequence
- EIIEHNKNYHKDRPHICDHCGETFTRNQQYQVHIQGHFIGKAKVDEQNKKKVQKYSCKTCDISFNNQKYLEKHVQKTKHQIDGVVCELCGAIFISNIKLCQHMIRVHKNEKRYTCEHCSKEFSQRTNLDRHLLLHTKIMDKSFICEHCGSSYFSQTAMREHIKTAHTTNEVKFECNICNKFFAAKRSLKRHKLTHSEERAYPCTYENCKESYKNQSHLTRHQKSAHNLEAARRVQKLVKNENGEYIPLEPVQEPKPVKKKKPAEKTVVAPEPGFTENVPCYNYDYVEAPPHPPQPPPPQQPQQQQMAAPPPASNFIVNNYGEQNINYGNEPMNNFEWQNLEQNLNNVMGANPVGFIEGGEFQEMNKERPGPHFINNNPEIRGYQENVFICEHCDESFLNSHSHQNHVLEHYNKDNKDTKKMLKLNCRTCSLVFSNHIQLEKHVQKTNHQIDGLVCEFCSAIFMTTVKLSQHLIKSHKNETWHTCEHCSKIFIVKADLDRHLLLHATSPDKSNVCDHCGSAFFSQDALKEHIKVAHASDKKYECDICSKLFAAQRSLKRHRLSHAEDGAFPCPIENCKESFKNQTLLAKHRKMMHVESDVSKSKKKGNDPSALIIPPVNNNNPNMPCYGGYDNNLPYNSVNHQFAVHSPSHAINANNYGDQNLNYRLDPNSEHYTNSYGLQDNSFEWQNLEMCNPQANNIDPGMASAAAAAAAKNNKYYPVMDVNAGGFMNVQDIKNQDPQQLMEINNQEFLGYQDIWNSNMVKIEYSDDVNSSSQVQGGGSTYNSIGNILTNLELIGNNSNFEQNFDIVTSHSIDPQKQHHYQKNQPPSSMMNVDNNLVNHQQYFQDQHHHQSPHQGTSQQMQYNNSMSHLPPPNHPHPSAHHPHPQHPHPHPQHPHSHQQPPQAPPQSMNQYSNQDMSQNPNHTITDISKTNNLQFVDSFTESIDYLQQSFQFV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -