Basic Information

Insect: Mochlonyx cinctipes
Gene Symbol: -
Assembly: GCA_001014845.1
Location: JXPH01028367.1:253-6187[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 8.6e-05 0.0036 17.9 2.2 1 23 297 319 297 319 0.96

2 11 0.0023 0.097 13.4 0.2 1 23 325 347 325 347 0.95

3 11 4.4e-05 0.0018 18.8 1.7 1 23 353 375 353 375 0.98

4 11 2e-05 0.00084 19.8 3.1 1 23 381 403 381 403 0.97

5 11 4e-05 0.0017 18.9 4.7 1 23 409 431 409 431 0.99

6 11 4.9e-05 0.0021 18.6 5.0 1 23 437 459 437 459 0.96

7 11 8.8e-07 3.7e-05 24.1 5.4 1 23 465 487 465 487 0.98

8 11 1.1e-07 4.6e-06 27.0 2.7 1 23 493 515 493 515 0.98

9 11 9e-06 0.00037 21.0 5.4 1 23 521 543 521 543 0.98

10 11 0.00011 0.0044 17.6 6.3 1 23 549 571 549 571 0.98

11 11 0.00017 0.0072 16.9 0.8 1 16 577 592 577 594 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	8.6e-05	0.0036	17.9	2.2	1	23	297	319	297	319	0.96
2	11	0.0023	0.097	13.4	0.2	1	23	325	347	325	347	0.95
3	11	4.4e-05	0.0018	18.8	1.7	1	23	353	375	353	375	0.98
4	11	2e-05	0.00084	19.8	3.1	1	23	381	403	381	403	0.97
5	11	4e-05	0.0017	18.9	4.7	1	23	409	431	409	431	0.99
6	11	4.9e-05	0.0021	18.6	5.0	1	23	437	459	437	459	0.96
7	11	8.8e-07	3.7e-05	24.1	5.4	1	23	465	487	465	487	0.98
8	11	1.1e-07	4.6e-06	27.0	2.7	1	23	493	515	493	515	0.98
9	11	9e-06	0.00037	21.0	5.4	1	23	521	543	521	543	0.98
10	11	0.00011	0.0044	17.6	6.3	1	23	549	571	549	571	0.98
11	11	0.00017	0.0072	16.9	0.8	1	16	577	592	577	594	0.95

Sequence Information

Coding Sequence: CACAACTCTGCCGATAGAAATAATCAATCGGAAATCCGTACGATTCCAGCTAATGTTCCGGCAACTAATTCGACAGCAGGATCATCCGACGTCAAAATAACTCCTATGAAAAACTTTTGGGTGTTGACAAATTTGATACAAGGCTCAAACGTGTATACTCTTCCAAAAATGGATGGAAACAAAGAGCAAGAAAATCCACCAATCATACAAACAGAAAGTCCATTTCTTTTGAATAGCGGTAATCCTGGGATACCAATTAATATTGGATCTAATCAAATAATTACTATACCAACATCCGTTATTgAACCCGGTGGATTAGTGAACCAACCAGGACAAAACGTAACTACACAGTCATCAGCACCCAGTTCAATGGGTTCAAATGTACAGTTACAAGTGAATAACAGCAGCGTCATTGTTGTTGATCAGAATAAAAATTCTAACAATTCACAACCAAGTCAACAGCATCAACAACATGGAGAAATTCAACAACAACCACAATATTCGCAACCGGTTCAAGTCCATCAAGTgattaataatgaaaatataataaaaccagAATTCAAACCACAGTCACATATAATGGATGTCCGTGCAGCTGATGGTTCAATTGTGAAAATATCAGCCAGCAGTTTAGCATCGGAACAACAAGAGACAAACAAAGCGATGAATGTTGAAATGTTGAAAGTAAACATTGAAGATCTAAGTCAATTTCTTTCCTACCATGAAGTGTTTGGGAAACTACCATCCGACATACTGTCGGCTTCATCAGCAAACATTGTGCCATCATCTGCAGCAAATCAACCCAATACTGCTGCTGTTACAAATGCTAGCCAAAATAATGTGataacaattaataataattataatgacAGTAAACTAGAAGGTCTCCATAACTGTGATATTTGTGGAAAAATATTCCAATATCGTTATCAACTGATTGTGCACAAGCGCTATCACAACGAGCGTAAGCCATTCTTGTGCCAGGTGTGTGGCCAAGCGTTCATGACATCCCTTGAGCTGTCCAAGCACGGAAAAGTTCACATTGGTGGTTCAATGTTCATCTGCAACGTTTGCTTTCATGTTTTTGCTAATGAATCGAGTCTAGATCGTCATATGAAGAGGCATTCGGCAGATAAACCGTTTGCCTGCACTCTATGCCAGAAAACGTTTGCTAGAAAAGAACATTTGGATAATCATACACGGAGTCATACCGGTGAGACTCCATTCAGATGCCAATATTGTGCAAAAACATTTACCAGAAAGGAGCATATGGTCAATCATGTTAGAAAACATACTGGTGACACCCCACACTATTGTAGTATTTGCGATAAATCGTTTACGCGCAAGGAGCATTACGCAAACCACAAAATGTGGCATACTGGCGAGACCCCACACCAGTGTAACATTTGTGGAAAAAAGTACACGAGGAAAGAACATTTGGACAATCATATgcgctctcatacaaatgaaaCACCGTTCAAATGTGAAATTTGCGGGAAATCCTTTACTAGGAAAGAGCATTTCACTAACCATATACTCTGGCACACAGGTGAAACACCCCATCGATGTGACATTTGTTCAAAGACATTCACAAGAAAGGAGCACTTGTTGAATCATGTCAGACAGCATACTGGAGAATCACCACACAGATGTTCCTACTGCATGAAGTCATTCACTCGCAAGGAACACCTAGTCAATCACATTCGACAACACACAGGCGAGACCCCATTCAAATGTGAGCACTGTCCGAAAGCGTTTACACGAAAGGATCATTTAGGTAAATTAATTTCTGAAATGAAGAACAGACATCCACAAAAATGTCCATTGTGTACCCCTTTTTAG
Protein Sequence: HNSADRNNQSEIRTIPANVPATNSTAGSSDVKITPMKNFWVLTNLIQGSNVYTLPKMDGNKEQENPPIIQTESPFLLNSGNPGIPINIGSNQIITIPTSVIEPGGLVNQPGQNVTTQSSAPSSMGSNVQLQVNNSSVIVVDQNKNSNNSQPSQQHQQHGEIQQQPQYSQPVQVHQVINNENIIKPEFKPQSHIMDVRAADGSIVKISASSLASEQQETNKAMNVEMLKVNIEDLSQFLSYHEVFGKLPSDILSASSANIVPSSAANQPNTAAVTNASQNNVITINNNYNDSKLEGLHNCDICGKIFQYRYQLIVHKRYHNERKPFLCQVCGQAFMTSLELSKHGKVHIGGSMFICNVCFHVFANESSLDRHMKRHSADKPFACTLCQKTFARKEHLDNHTRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGDTPHYCSICDKSFTRKEHYANHKMWHTGETPHQCNICGKKYTRKEHLDNHMRSHTNETPFKCEICGKSFTRKEHFTNHILWHTGETPHRCDICSKTFTRKEHLLNHVRQHTGESPHRCSYCMKSFTRKEHLVNHIRQHTGETPFKCEHCPKAFTRKDHLGKLISEMKNRHPQKCPLCTPF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -