Mcic012180.1
Basic Information
- Insect
- Mochlonyx cinctipes
- Gene Symbol
- -
- Assembly
- GCA_001014845.1
- Location
- JXPH01040177.1:969-2432[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00048 0.02 15.5 1.8 1 23 29 51 29 51 0.98 2 15 0.00018 0.0074 16.9 0.8 1 23 58 81 58 81 0.96 3 15 4e-07 1.7e-05 25.2 0.7 3 23 91 111 89 111 0.97 4 15 0.018 0.76 10.5 0.5 1 23 118 140 118 140 0.98 5 15 0.015 0.61 10.8 1.7 1 20 146 165 146 167 0.95 6 15 0.0079 0.33 11.7 0.1 5 20 179 194 178 196 0.93 7 15 0.026 1.1 10.1 1.8 1 23 204 226 204 226 0.97 8 15 0.00047 0.019 15.5 2.2 1 23 231 254 231 254 0.96 9 15 1.2e-06 5.2e-05 23.7 3.8 1 23 262 284 262 284 0.97 10 15 0.018 0.75 10.6 0.1 1 23 290 312 290 312 0.97 11 15 0.00032 0.013 16.1 1.1 1 21 318 338 318 339 0.94 12 15 0.002 0.082 13.6 4.1 1 23 347 370 347 370 0.88 13 15 7.9e-07 3.3e-05 24.3 1.3 1 23 376 398 376 398 0.99 14 15 4.7e-05 0.0019 18.7 1.9 1 23 404 427 404 427 0.96 15 15 0.0041 0.17 12.6 3.5 1 23 435 458 435 458 0.94
Sequence Information
- Coding Sequence
- ATGCATGAAGACGAAGCACCCAAAATAAGTGAACGCCCTATTGAATGTCACATGAGAATAAGGCAGAAGAGTTACAAAAAATCCTACACCTGTCATGTTTGCGGTAAAATTTATGACGAGAAGTTGGACTTCAAAATGCATCTACAAAGCCACAATATTGGAGCATATACGTTTAAGTGTGAATCTTGCAAAAAACCATTcgcgaaaaaatatttgttggaaTATCATTTAATTTCTATTCACGGTAAGCAAGATGCAAAATCACTCGATTGCAATATTTGTACGAAAAAATTTGCGGTAAATTCTCAACTAACTAGGCATATGAGGATACATACAAAAAAAGAATGCCCTTACGTTTGTGAAATTTGTCAAGGTAGGTTCACATGGAAACAAACCCTAGATACACACATGCTTAAACATACTGGAGAATATAAATTTAGGTGTGAATGCTGTGAAAAACCATTCGTACATAAACGTTCCCTCGAAGCCCACTTGATTTTCTGCAGGAAAGATGACAAATCACAGGAGTCCAATATTTGTAAGCAAGAATTTGTCAGCAAATCGTATCTTACTAATCATATGACGGCAGAACAGACTAAAGAATGCTCTTACGCCTGTGAGATTTGTCAAGCAAAATTCATATGCAAAGATGAATTACATACACATATGCTTGAACATGAAGGGTGTAAATTTAGCtgtgaattttgtaaaaaaccATTCGCTCAAAACTGTTCCTTGCAATATCATTTGATTTCTATTCACGGTAAGGAAGATGAAAAACCGCACGAGTGCAATATTtgtaagaaaaaatttattacaaattctCAACTTACAAGGCATACGAAGGTACATACTAAAGAATGCTCTTACGTTTGTGAGATATGTGAAGAAAGGTTCATATGGAAACCAACGTTAGATGCACACATGTTTAAACATACTGGAGAATATAAATTTAGGTGTGAATTCTGTGAAAAACCATTCGCACACAAACGTTCCTTCCAAGCCCATTTAATTCGCTGTAAGAAAGATTACAAATTGCACGAGTGCAATATTTGTAAGAAGAAATTTAAGAACAAAGCTTACCTTACTACGAATCATATGAGGATACATACTAAAGAATTCCCTTACGTTTGTGAGATATGTGAAGAAAAATTTACAAGCAAACAAACATTGAATAGACATTTGCGTAAACATACTGGAGAATATAAATTCAGTTGTGAATTCTGTAAAAAACCATTCGCAGAAAAACATAacttaaaaaatcatttaatttctaTACATGGTAAGGAAGCAGATAAACCTCATCAGTGCCTTGTTTGCCAGAAAAGATTCCTCAGACAAGATCAACTGAAACGTCATTCAATAAAAACACATGCCACAAATACAAATTTCGTGGAAAAAGATTCCTTGCCAGCCCATTTAGTTTCTATCCACGATATGAAAGATGAAAAAGAAATACAGTAG
- Protein Sequence
- MHEDEAPKISERPIECHMRIRQKSYKKSYTCHVCGKIYDEKLDFKMHLQSHNIGAYTFKCESCKKPFAKKYLLEYHLISIHGKQDAKSLDCNICTKKFAVNSQLTRHMRIHTKKECPYVCEICQGRFTWKQTLDTHMLKHTGEYKFRCECCEKPFVHKRSLEAHLIFCRKDDKSQESNICKQEFVSKSYLTNHMTAEQTKECSYACEICQAKFICKDELHTHMLEHEGCKFSCEFCKKPFAQNCSLQYHLISIHGKEDEKPHECNICKKKFITNSQLTRHTKVHTKECSYVCEICEERFIWKPTLDAHMFKHTGEYKFRCEFCEKPFAHKRSFQAHLIRCKKDYKLHECNICKKKFKNKAYLTTNHMRIHTKEFPYVCEICEEKFTSKQTLNRHLRKHTGEYKFSCEFCKKPFAEKHNLKNHLISIHGKEADKPHQCLVCQKRFLRQDQLKRHSIKTHATNTNFVEKDSLPAHLVSIHDMKDEKEIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -