Basic Information

Insect: Mochlonyx cinctipes
Gene Symbol: -
Assembly: GCA_001014845.1
Location: JXPH01025684.1:4610-6404[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 2.5e-05 0.001 19.5 1.7 2 23 28 49 27 49 0.96

2 12 0.00098 0.041 14.5 0.8 1 23 57 79 57 79 0.98

3 12 0.00022 0.009 16.6 2.0 2 23 87 108 86 108 0.97

4 12 4.7e-07 2e-05 25.0 1.2 1 23 114 136 114 136 0.99

5 12 1.8e-05 0.00076 20.0 2.8 1 23 143 165 143 165 0.98

6 12 3.8e-06 0.00016 22.1 0.4 1 23 171 193 171 193 0.97

7 12 2.1e-05 0.00087 19.8 0.5 1 23 199 221 199 221 0.98

8 12 3e-05 0.0013 19.3 0.7 1 23 227 250 227 250 0.96

9 12 0.0004 0.017 15.8 3.7 1 23 256 279 256 279 0.95

10 12 0.00013 0.0055 17.3 3.1 1 23 285 307 285 307 0.99

11 12 1.3e-05 0.00056 20.4 0.9 1 23 313 335 313 335 0.97

12 12 0.00091 0.038 14.6 0.5 1 22 341 362 341 365 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	2.5e-05	0.001	19.5	1.7	2	23	28	49	27	49	0.96
2	12	0.00098	0.041	14.5	0.8	1	23	57	79	57	79	0.98
3	12	0.00022	0.009	16.6	2.0	2	23	87	108	86	108	0.97
4	12	4.7e-07	2e-05	25.0	1.2	1	23	114	136	114	136	0.99
5	12	1.8e-05	0.00076	20.0	2.8	1	23	143	165	143	165	0.98
6	12	3.8e-06	0.00016	22.1	0.4	1	23	171	193	171	193	0.97
7	12	2.1e-05	0.00087	19.8	0.5	1	23	199	221	199	221	0.98
8	12	3e-05	0.0013	19.3	0.7	1	23	227	250	227	250	0.96
9	12	0.0004	0.017	15.8	3.7	1	23	256	279	256	279	0.95
10	12	0.00013	0.0055	17.3	3.1	1	23	285	307	285	307	0.99
11	12	1.3e-05	0.00056	20.4	0.9	1	23	313	335	313	335	0.97
12	12	0.00091	0.038	14.6	0.5	1	22	341	362	341	365	0.92

Sequence Information

Coding Sequence: ATGTGTCCAAGCTCATTATTATCCTACAATTCAAAGACAATTGTAATCCATGTTAAATCAGagcataatataaaaatactaatttgTGAAGAATGTGACATGGAATTTAGACGAAAACATGACCTAAATACTCATTTAAAACAGCACACAAACGAgaacaattcaattttcaaatgcgACATTTGTGATAATATATTCGCAAACTTCAGAGCGTTGCGATTGCACAAAAAGAATCACACTTCAACGTCAAAAGACTGGTCCTGTGAACATTGTAATAAGAAATACAGTTCGAAAAATTTGCTGGACGAACATCTAAACATGCACACTGGTGACAGACCATATAAATGCTCAAACTGCCCCAAAGATTTTGCTTCAAAATACACTTTGTCTGCGCATATGAAGACGCATTTGGACCGCCAACGACAATATGAATGTACACACTGCAAAAAAGGATTTTATAGCCAACAAAATCTGATTCAGCACGAGAAAATTCACAGCGGCATCAAGGATTATGTCTGTGCGGATTGTGGGAAGACATTCATTTCCCAGCATAATTTGGATGTGCACAAAATTGTCCATTCTGGCTACAAACCTTTCATTTGCAGAACTTGTGGGAAATCATTTGCTAGGAGAGCAGAGATTAGGGATCATGAGAGGACGCACACGGGAGAACGACCATTCTCGTGTGATCTTTGCACCGCTAGCTTTGCACAACGGTCTAATTTACAGTCGCACAAACGTGCCACCCATTTCAATGACAAAAGACATAAATGCGACACTTGTAATCGCTCGTTTAAGAGAAGAAGGCTGCTGGATTACCACATTAAAGCCTCGCATACAGGAGAGCGCCCCTATAAATGTAATGTCTGTTCCTCAACGTTCGTTTATCCTGAACATTATAAGAagcatttaaaaatacatacaGGCCTTAAACCATACTCTTGCGAGgTATGCGGAAAAACGTTCAATAGTCGTGATAACAGAAACGCCCATCGATTCATTCACAGCGACAAAAAGCCGTACGAGTGTATGAAATGCGGCCAAGGATTCATGCGGAAACCTCTCCTCTACACTCACATGCAGCAAAAGGGTCATTTGAATGATACAATTGTTGTTAATCAGCCGAGAATCACAAAAGAACTTCTGGAATTTGAAGTGACTGAAGATTCGATTGACGATGTCGATATTGATGACAAGTCTCAAATCGGAATCACGATTAGCCAAAGTGACCAAGATGACGACTTGATTGAAGATtATTATATTGAAGAACATATAGAGGAAGAGGATGAAGAAATTGAAGAAAGTCACATCGAAGACGAGCAACTGATTGTCGACGAATTGAATGGCATTTCCGAGGACCAAATTGTGATGTCGGGGGATGGTAATTTCTTGGAGGACAATGGGCCTGTTCAAATAGTGAGGGTGCATTTGAATGATGAGAGCGGGGATGATAATATTGCGTGGGTAAATTTAGTCTCGAATGCAGTTTCACAGTAA
Protein Sequence: MCPSSLLSYNSKTIVIHVKSEHNIKILICEECDMEFRRKHDLNTHLKQHTNENNSIFKCDICDNIFANFRALRLHKKNHTSTSKDWSCEHCNKKYSSKNLLDEHLNMHTGDRPYKCSNCPKDFASKYTLSAHMKTHLDRQRQYECTHCKKGFYSQQNLIQHEKIHSGIKDYVCADCGKTFISQHNLDVHKIVHSGYKPFICRTCGKSFARRAEIRDHERTHTGERPFSCDLCTASFAQRSNLQSHKRATHFNDKRHKCDTCNRSFKRRRLLDYHIKASHTGERPYKCNVCSSTFVYPEHYKKHLKIHTGLKPYSCEVCGKTFNSRDNRNAHRFIHSDKKPYECMKCGQGFMRKPLLYTHMQQKGHLNDTIVVNQPRITKELLEFEVTEDSIDDVDIDDKSQIGITISQSDQDDDLIEDYYIEEHIEEEDEEIEESHIEDEQLIVDELNGISEDQIVMSGDGNFLEDNGPVQIVRVHLNDESGDDNIAWVNLVSNAVSQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -