Mcic013520.1
Basic Information
- Insect
- Mochlonyx cinctipes
- Gene Symbol
- -
- Assembly
- GCA_001014845.1
- Location
- JXPH01051067.1:3418-5564[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0022 0.09 13.5 0.6 2 23 8 30 7 30 0.96 2 14 0.0001 0.0042 17.6 1.1 3 23 45 65 44 65 0.96 3 14 1.2e-05 0.00051 20.5 1.1 2 23 337 358 336 358 0.97 4 14 6e-05 0.0025 18.4 2.6 1 23 364 386 364 386 0.97 5 14 0.0073 0.3 11.8 1.0 1 23 412 434 412 434 0.97 6 14 2.5e-05 0.001 19.6 1.7 1 23 440 462 440 462 0.97 7 14 1.6e-05 0.00068 20.1 0.1 1 23 468 492 468 492 0.96 8 14 2e-06 8.1e-05 23.0 1.8 1 23 498 521 498 521 0.97 9 14 0.00017 0.0071 16.9 1.0 3 22 532 551 530 552 0.89 10 14 0.00012 0.0051 17.4 0.8 2 23 559 580 558 580 0.97 11 14 0.0068 0.28 11.9 5.6 1 23 586 608 586 608 0.98 12 14 1.6e-06 6.6e-05 23.3 1.6 1 23 614 636 614 636 0.98 13 14 0.00046 0.019 15.6 1.4 1 23 642 664 642 664 0.98 14 14 0.36 15 6.5 2.5 5 21 673 689 670 693 0.88
Sequence Information
- Coding Sequence
- atggataaaaGAATAGACAGTTATTgtgaaatttgcgaaaaattttACGTAAATCCCAGTGTAATGAGAAGACATAAAAAAAAGATTCACAATGTACTTGTTCCATTCGAAAGACCTAATTTACGAAAAGATTGTGAAGTTTGTGGAAAAAGTTTTATAAACTTGGAGCATTTGGAGTTGCACAAAAAGTTCCACATCGGAGTGGTAGCTGTCAAGACAAATTTGAAGGACAAAAGTgagatttcaaaaattatctgtCCATTACCTGTTAAGACAGATGCAGAAATTAAGTTAAAGGAAAGTGTTCTCCCAAAAGGTGATGATGGTGGTCCAACAAAAATAACTGCGGAAGACGTATTGGAAGTTAAGGATGAACCAGATGAACCTACTGAATCCGAACCTGATTCTCATAATGAGCACCTCTTCATTCGGGAAGCTCATTATGATTTTAACGGAGTTTTAAAAAGAACCTGTTTGCCCGTTCTTCCTTCAGctAAACTATTGCCTCTGCCAGTAAAGAAGATAGAAATCAAGGATGAGGAGGAAGAGATTTTAGAAAATGAGAAAGATGAGGAGGACGATGATGACGAAGAATATATTCCTTtatcaaaaagaagaaaagcgtCAGAAAAAGTACTCAAACAAACCGAGAAGAAAGTAGAAAAAAAGACAGAAACGGAAAAGTTGAAAGGGGATAAAATGGAAGAAGACGAAGTTGAAGAAGATCCAGACACGTCGTGGTTCCAAGATGATTTTACAAATGATAGTTCTAGCTCCGAAGATTCATTTGACGAAGCAAACTATATTCCTATATCAAAAAGAGGAAAACCTGTAAAAGATGTAGCAGATAAAGAAGATACTAAAAAAGTAGCAGATGAAAAAGAGGACACTAAAGAAGTAGTGGATAAGAAAGACGACACTAAAGAAGTAGCAGATAAAAAAGAAGACAGTAAAAAAGTATCagataaaaaagcaaaaaccaaaaaactggCAGAAAAACTGTCTTTGGAATGCAAGGAGTGCtcaaaggtttttgaaaataacaagCTTTTTAAATCCCACATGATAACACACTCAAAAGATCGTCCATTTGCATGTGAAGTATGTGGAAAAACGTTTAAGCATACAGGGTCGTTTAGCAAGCACAAGCAAGTACATACAAAAACCCCAGAAGAATTATTAGCAACTACGAAAAaatatgcaccaaaaaaaatttacgattaCAGAGGAAAGTTTGCATGCGATCTTTGCCCCAAAGTTTATCTAAAGAAGCACACTCTGAAAGTCCATGTTCTTACTCATACAGGAGACACTCCATTTATTTGTGACATTTGCCAGAAAGGTTTCACCAACAAACAATACCTTAAAGAGCACAAGATGCGCCATAACAACGAAAAACCATACATTTGCTCTGAACCTAACTGTGGCATGGCCTTTATCCGTAATTCGCTCCTGAAAGATCACATCCGGATCCATTCGGGAGAAACCCCACACTCTTGCAATGAGTGCGACAAAAACTTCCGCCGCCTTGACGCTCTGAGAGCCCATCAAAAGCGAGTACATCTTGGACTTGTTCCAAAAGAAACCCATCTATGTGACATCTGTTCCAAAGTGTTTTCGGACAAAAGATCACTACAAGATCACATATGGACACATAAGGATAAAAAACCGAACCAATGCCAATTATGTCCAAGATCTTTTGTCCGAAAACACGATCTGGATGACCATATGGTCGTCCATTTTCCCTCTAAAAACTTTGAATGCGAAACATGCCACAAATTCTATTcaacaaaaaagattttgagGAACCACAAAAGAATGCATTTGAATATAAGACCCTATAATTGTGAGGTCTGTGATAAACGTTTTAGGACACGTCAGGACCTTACCTCACACACAAGGATTCATACGGGTGAAAAACCTTTCGTCTGCGAACACTGTAAATCTAGTTACAGAACAGTTTGGGACCTCACAATCCATCTCAGGAGTCACACTGGTGAAAAACCGTATAAATGTGTTTGCGGCCAAGATTTTAAACACAGTCAACAGTTTAAAAACCATAAACAACAAACAGGACACCGCAATGATGTTTGA
- Protein Sequence
- MDKRIDSYCEICEKFYVNPSVMRRHKKKIHNVLVPFERPNLRKDCEVCGKSFINLEHLELHKKFHIGVVAVKTNLKDKSEISKIICPLPVKTDAEIKLKESVLPKGDDGGPTKITAEDVLEVKDEPDEPTESEPDSHNEHLFIREAHYDFNGVLKRTCLPVLPSAKLLPLPVKKIEIKDEEEEILENEKDEEDDDDEEYIPLSKRRKASEKVLKQTEKKVEKKTETEKLKGDKMEEDEVEEDPDTSWFQDDFTNDSSSSEDSFDEANYIPISKRGKPVKDVADKEDTKKVADEKEDTKEVVDKKDDTKEVADKKEDSKKVSDKKAKTKKLAEKLSLECKECSKVFENNKLFKSHMITHSKDRPFACEVCGKTFKHTGSFSKHKQVHTKTPEELLATTKKYAPKKIYDYRGKFACDLCPKVYLKKHTLKVHVLTHTGDTPFICDICQKGFTNKQYLKEHKMRHNNEKPYICSEPNCGMAFIRNSLLKDHIRIHSGETPHSCNECDKNFRRLDALRAHQKRVHLGLVPKETHLCDICSKVFSDKRSLQDHIWTHKDKKPNQCQLCPRSFVRKHDLDDHMVVHFPSKNFECETCHKFYSTKKILRNHKRMHLNIRPYNCEVCDKRFRTRQDLTSHTRIHTGEKPFVCEHCKSSYRTVWDLTIHLRSHTGEKPYKCVCGQDFKHSQQFKNHKQQTGHRNDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -