Mcic006659.1
Basic Information
- Insect
- Mochlonyx cinctipes
- Gene Symbol
- Zfp646
- Assembly
- GCA_001014845.1
- Location
- JXPH01064528.1:1421-3261[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 8.6e-05 0.0036 17.9 2.4 1 23 6 29 6 29 0.97 2 14 9e-06 0.00037 21.0 1.2 1 23 41 63 41 63 0.97 3 14 0.05 2.1 9.2 3.3 3 21 217 235 217 237 0.95 4 14 3.2e-05 0.0013 19.2 3.2 1 23 243 265 243 265 0.95 5 14 0.0072 0.3 11.8 3.4 1 23 287 309 287 309 0.98 6 14 2e-06 8.4e-05 23.0 0.3 1 23 315 337 315 337 0.98 7 14 2.5e-06 0.0001 22.7 0.4 1 23 343 365 343 365 0.97 8 14 6.5e-05 0.0027 18.3 4.5 1 23 371 393 371 393 0.98 9 14 0.0019 0.078 13.6 0.4 1 22 401 422 401 423 0.89 10 14 3.1e-06 0.00013 22.4 0.4 1 23 429 451 429 451 0.98 11 14 0.00088 0.036 14.7 5.0 1 23 457 479 457 479 0.98 12 14 3.1e-06 0.00013 22.4 1.7 3 23 487 507 485 507 0.98 13 14 0.00064 0.027 15.1 2.6 1 23 513 535 513 535 0.98 14 14 0.46 19 6.1 0.2 5 22 544 561 542 564 0.89
Sequence Information
- Coding Sequence
- ATGGACAATAAAAGTTATAACTGCGACAATTGCGGTAAATTTTACGCCACTTTGAAGTCTTTGAAAAGTCACCGTAAAAGACAGCATGGAATTCTCCCAGAACGCCCTGCACCCACCCATTACGCCTGTGAAGAGTGCGGAAAAGAATTTAAGAATTCAGAACACTTCCAAATGCATAAAATTGTTCATAAAGGAGACGGTCCTCTAGAATTTAGGCTTAAAACAGTTTCGACTTTTAAATTTGACCCCGAAAACCATTCCAGCCCTTCTTCTTCAGCACCATTATCACCCCAAATAGAAgacaatataaatattatagagGAAGTACCTAGTGACATTGAAATAAAGGAAGAGCCTATTGAAGAAGGGAATCATCAAGAACTTTTATTCGTTAGAGAAGCACATTACGATTTTACTGGAGCTTTGAATGAGAAAGACTTGCCAAAACCTCCAGgtGAGATACTACCGCAAAATGTAGATTTGTCTACTACAAAAAAGCATTTAGTAAACGAGTCCGAAGAAGAATTGGAAAATGAAGACAATGGTGAACCATCACTGACCAGTTTAATTCCAAaggatgaaaatgaaattaaatcggAAGTTAAGAGAAAAAGAAAGTCCAAAAGAATAACTGTTGAAGAAACGGGTTGCAGAATTTGTCTGAAAGAATTCAAAACCCCTAAACTACTTCAATCACACTTGAAATGTCACAACGATGCTCGCCCATATTCTTGTGAAGAGTGCGGGAAAACGTTCAAACATGGAAGCAGTCTGAGAAATCATAAATTCTTGCATCAAGAGAATGGAGctgaaaagaggaaaaaatacaAGCCTGCTCCTGGAGCATATAGTGGATCGTTTAAATGCTCTTTATGTCCAAACGTGTACACCAAGAAAACCACGCTTGAAATCCATTTTCGGCACCACACAGGCGAAACTCCATTTGTCTGTGAAATTTGTCCTAAaggatttattaataaaaagtcATTAAAGGAGCACCTCATGAGACATAACGATGAGAGGCCTTTTGCGTGCACCGAATGTCCTTTACGCTTCAttcgaaattcaaatttaaaagatcACCTTAAAATACACACTGGAGAGAAGCCATTCACTTGCTCAATTTGTAGTAAATGCTTCAGGAGGACAGAAGATCTAAAAATCCACAGCAAAAGTCATCAAGCAATAAAAGATAAGACTTTCCTTTGTGACATTTGCTCAAAAACATTCGGGGACCGTAAAAGTCTCTCAGACCATATCTGGACACATTCTGATGTCAAACCTTATCAATGTGAGCTCTGTCCTAAATCATTTGTCAGGATGTTTGATCTGAAAGAGCACATGAGCGTCCATTATCCTAACAGGAAATACGAGTGTGAAACATGCCACAAACTATATTCAACTACaaaaacacttagaaaacaTAAAAGGATTCATTTGGACTTGAGGCCCTACGGATGCGATATTTGTAGTAAAAAGTTTCGGGTTTCAGACCATCTAAAGGTCCATATCAGAACTCATACTGGGGAAAAACCATTTTCTTGTCAATATTGTCCAAGAAGCTTCCGGACCTCCGGGGATCACCGTATTCATGTTAGGTCGCACACTGGAGAACGTCCCTATGCTTGTGACTGTGGAAGTTCTTATGTGGTTGGGTCACAGCTGAAGAAGCACCAGAAAAATACTGGACATGTTAATATGGTGGTTGACgataaaactataaaagaaGCAGAAGATTTGTCTGCGTACCTGTTGGAAAAACAAGAAGAAGcatcaacaatttaa
- Protein Sequence
- MDNKSYNCDNCGKFYATLKSLKSHRKRQHGILPERPAPTHYACEECGKEFKNSEHFQMHKIVHKGDGPLEFRLKTVSTFKFDPENHSSPSSSAPLSPQIEDNINIIEEVPSDIEIKEEPIEEGNHQELLFVREAHYDFTGALNEKDLPKPPGEILPQNVDLSTTKKHLVNESEEELENEDNGEPSLTSLIPKDENEIKSEVKRKRKSKRITVEETGCRICLKEFKTPKLLQSHLKCHNDARPYSCEECGKTFKHGSSLRNHKFLHQENGAEKRKKYKPAPGAYSGSFKCSLCPNVYTKKTTLEIHFRHHTGETPFVCEICPKGFINKKSLKEHLMRHNDERPFACTECPLRFIRNSNLKDHLKIHTGEKPFTCSICSKCFRRTEDLKIHSKSHQAIKDKTFLCDICSKTFGDRKSLSDHIWTHSDVKPYQCELCPKSFVRMFDLKEHMSVHYPNRKYECETCHKLYSTTKTLRKHKRIHLDLRPYGCDICSKKFRVSDHLKVHIRTHTGEKPFSCQYCPRSFRTSGDHRIHVRSHTGERPYACDCGSSYVVGSQLKKHQKNTGHVNMVVDDKTIKEAEDLSAYLLEKQEEASTI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -