Mcic013540.1
Basic Information
- Insect
- Mochlonyx cinctipes
- Gene Symbol
- -
- Assembly
- GCA_001014845.1
- Location
- JXPH01008470.1:8614-11750[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.33 14 6.6 7.9 1 23 181 203 181 203 0.96 2 14 7.5e-06 0.00031 21.2 3.5 2 23 210 231 209 231 0.98 3 14 0.017 0.7 10.7 1.8 2 23 236 259 235 259 0.95 4 14 0.0007 0.029 15.0 1.4 3 23 306 326 305 326 0.97 5 14 0.0041 0.17 12.6 0.9 1 23 406 429 406 429 0.96 6 14 6.2e-05 0.0026 18.3 3.8 1 21 437 457 437 458 0.96 7 14 0.029 1.2 9.9 1.3 3 23 469 489 467 490 0.94 8 14 5.1e-06 0.00021 21.7 3.9 1 23 504 526 504 526 0.97 9 14 1.5e-08 6.3e-07 29.7 1.1 1 23 533 555 533 555 0.98 10 14 1.2e-07 4.9e-06 26.9 1.7 3 23 567 587 565 587 0.96 11 14 2.2e-05 0.00091 19.7 3.0 1 23 593 615 593 615 0.99 12 14 1.5e-06 6.4e-05 23.4 2.2 3 23 623 643 621 643 0.97 13 14 2.5e-07 1e-05 25.9 0.9 1 23 649 671 649 671 0.99 14 14 0.0069 0.29 11.9 0.1 1 23 677 701 677 701 0.93
Sequence Information
- Coding Sequence
- atgTTTCAGCTAGACTTTAGCGTTGAATATGATCTGGACAAGATTTGCAGATCATGTTTGGGTGAAAGCACTGAAATGAACAACATATTTACGGAAAATATTGAAGATATTTCATTGAATGAAATTATTTCTAGTTGCTCACAAATTCAGCTGAACATAAATGATTGTCTTCCAAACAAGATTTGTTTGAACTGCACCATGGAGGTAAGCACAGCTTATCAATTCAAAAAGAAATTCGAGCAAAGTGACTACATGCTGAGGGAATATTTGAGCAGGAATAAAATGCATTCTGTAATGGAGGAGGACATGAAGCAAGACAGTAATTCCGAACATCACCTCTTTGAAATAAAGCCTGAAATAACGTTTCTGGAAGAATCTGATCCTTTGGTGAACGAAAAGTATTTTGTGAGCAGAATGAACGAGAAAACTGACAATATTTTTGGGGATACATCGAGGCACACAATAGTACCAATAGAATCAACATACCAAAAAATTGATCCCGCTGATATTACAATGCACGTCGAGTTCAAGAATGGACGACATCATTGCTTGCTCTGCAAACGTCATTTTGTCGACAAGAAAGTCCTCAATAGTCACATGAAATTCCACACTAGAATTGGGTTGAAGCGATGCAACGTTTGCGACCGAGCCTTCATCAAGAACTACCACCTGACTCGTCATTTAAAGACTCATTCGcgtattttaaaatgtaaattttgtgacGAACGTAGCTTTGATTCAAATGCCGAGCTGAGGTCGCACATAAATCACAACCACTTCTTGGAAGCTACTGCAGATAGGATAAagttaaataagaaaaaatgtaaAGCAAAGACAAAGGAAAATTCTAAAGAAAAGACGGCCGTAACCGCACTCGTTCAAACGGTACCAGAAAATGACGAATTGGAGGCCATATGTAAACTGTGTGAGAATAAATTCACTAGAATTTATGAGCTCCGAAGTCACATGAAAAGTCATTTGGATCCAAAAACCCTTGAAAATGTTGATTTCAATATGAAGCAATATCTGTTTGAGGATGGTGTAGTGGCTGagaatgtaataaattttatagtgaCCCAAATTTATCAAGGAAATTCGCAACGGTACTACCAAGTAGTGAATAAAAATGGGGATGAATTGGGTCTAAGCGATTCTGAATCAGAAAATGAGGATGAGAAAGACAGCATTTTCTACGAAGGATTCATTAAAAGAGATCACGTTTGTTCAAAATGCAACATTTCGTTTGATAGAATGCGAAAAGTTATCGAGCACATGAGGGAAGCGCACCAGAAAGACGATTTCAGTGATTTTAAATGCACTCATTGCAGTAAATGTTTTCCGAACCCGTTTCTTCTGGAGCGCCATTTGAAATCGCAATGCGAGAATacgaacaaaaaaatcttttgcgaAGTCTGCAAGGAGAAATTCATGTGGCAAACGAGCCTGAACAAGCACATCAATGTCCACCACAAGCCAGAAATTATTGTTCCATACAGACCGAAAAAATTACACGAGTGCAGAGTTTGCCAAAAATCGTTTAGTCGACCTGAACATTTGGAGCGCCACACCAAAATCCACAATCCTTCGGAGAAAAAGTTTGAATGTCCAGAGTGTGAGAAGAAATTCAATCGAAAAGACAATTTGCGGTCCCACATGCGGATCCATACACAGGATAGGGAGGAAAATGATAAGCATTTATGCGTCTATTGCGGAAGAAGCTTCTCAAATTCGTCCAATTTGATTGTCCATATGAGAAGGCATACTGGAGAGAAGCCGTACAAATGCGATATGTGTGATAAAGgCTTTCCCAGGTCCTCAGATTTACAGTGCCATAGAAGGACACATACTGGCGAAAAACCCTGTCTATGTACAATCTGTGGGAAAGGATTCTCGAgGTCAAATAAATTGGTCCGTCATATGCGGATCCACACTGGAGTTCGACCATATGAATGTACATACTGCGACCGAGCTTTTACACAGTCCAATGATCTCACCTTGCATATAAGACGACATACAGgcGAAAAGCCATATGTTTGTGGTGTTTGTGGGGATCGCTTCATTCAAGGAACCGCTTTAAAAGCACATCAACGTATGCAAAATCATTTTGATGATAATAAAACAAGTCCCTTTGCGAGCATAAGTGTCAACAATCCAAACAGATTTACAAACGCTAATCGAGTAAACAGAATTGGAGATTCGAATCCGAAAGACCCAACGCTTCCAGCCGTTAAGGCCGTTAAACCTGTTAAAGCTCGATCTAAAGTGgcaaaacatataattttggacaataatgTAAAAACCGAGCAACAAAAAAGTCAAACATTACTTGTTGTGCCTGTGTCAATAACCGAAGCAGCTGTTGCATCCTCATTAACGTCAACTTCAACAACCGACTCATCAGGCCCAGCAGGGCCATCCGCGCCAGCCGTTCAACGAGTATTCCCAAATATTGGCGTTCCATCAGGATATATTGCTGCGAACGGAGTGCCATATTTGTCAAATAGTGTTTTAGTGCAGAATTTTGATttgcaaacaatattttcaattccGCAATCACAATATAACCAATAG
- Protein Sequence
- MFQLDFSVEYDLDKICRSCLGESTEMNNIFTENIEDISLNEIISSCSQIQLNINDCLPNKICLNCTMEVSTAYQFKKKFEQSDYMLREYLSRNKMHSVMEEDMKQDSNSEHHLFEIKPEITFLEESDPLVNEKYFVSRMNEKTDNIFGDTSRHTIVPIESTYQKIDPADITMHVEFKNGRHHCLLCKRHFVDKKVLNSHMKFHTRIGLKRCNVCDRAFIKNYHLTRHLKTHSRILKCKFCDERSFDSNAELRSHINHNHFLEATADRIKLNKKKCKAKTKENSKEKTAVTALVQTVPENDELEAICKLCENKFTRIYELRSHMKSHLDPKTLENVDFNMKQYLFEDGVVAENVINFIVTQIYQGNSQRYYQVVNKNGDELGLSDSESENEDEKDSIFYEGFIKRDHVCSKCNISFDRMRKVIEHMREAHQKDDFSDFKCTHCSKCFPNPFLLERHLKSQCENTNKKIFCEVCKEKFMWQTSLNKHINVHHKPEIIVPYRPKKLHECRVCQKSFSRPEHLERHTKIHNPSEKKFECPECEKKFNRKDNLRSHMRIHTQDREENDKHLCVYCGRSFSNSSNLIVHMRRHTGEKPYKCDMCDKGFPRSSDLQCHRRTHTGEKPCLCTICGKGFSRSNKLVRHMRIHTGVRPYECTYCDRAFTQSNDLTLHIRRHTGEKPYVCGVCGDRFIQGTALKAHQRMQNHFDDNKTSPFASISVNNPNRFTNANRVNRIGDSNPKDPTLPAVKAVKPVKARSKVAKHIILDNNVKTEQQKSQTLLVVPVSITEAAVASSLTSTSTTDSSGPAGPSAPAVQRVFPNIGVPSGYIAANGVPYLSNSVLVQNFDLQTIFSIPQSQYNQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -