Mcic005477.1
Basic Information
- Insect
- Mochlonyx cinctipes
- Gene Symbol
- -
- Assembly
- GCA_001014845.1
- Location
- JXPH01072044.1:405-2453[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.011 0.47 11.2 0.2 1 23 147 169 147 169 0.97 2 15 0.0028 0.12 13.1 2.1 2 23 176 197 175 197 0.98 3 15 0.23 9.4 7.1 0.2 2 14 205 217 204 223 0.80 4 15 0.0011 0.044 14.4 1.2 1 23 247 269 247 269 0.96 5 15 2.3e-05 0.00095 19.7 0.6 1 23 275 297 275 297 0.99 6 15 5.1e-06 0.00021 21.7 0.3 1 23 303 325 303 325 0.98 7 15 0.0042 0.17 12.6 0.8 1 23 331 353 331 353 0.98 8 15 0.086 3.6 8.4 2.3 3 23 369 389 367 389 0.98 9 15 6.2e-06 0.00026 21.5 7.6 1 23 395 417 395 417 0.98 10 15 8.5e-07 3.6e-05 24.2 0.3 1 23 423 445 423 445 0.96 11 15 0.0006 0.025 15.2 1.3 1 23 451 474 451 474 0.93 12 15 3.4e-06 0.00014 22.3 0.2 1 23 483 505 483 505 0.98 13 15 2.2e-05 0.00093 19.7 0.3 1 23 511 533 511 533 0.98 14 15 9.6e-06 0.0004 20.9 1.8 1 23 543 565 543 565 0.98 15 15 0.0012 0.049 14.3 1.0 2 23 574 596 573 596 0.92
Sequence Information
- Coding Sequence
- ATGGATGTGGAATGTATTGTGGATATAAAAGAAGAACCGGATGACGAGGACGAATTCCGGTCGGCTCACTCTGAGACATTGTTTGTCCGTGAAGAGTATTATGACTTTAACAATATTCTCAATGATGTGCCAGctaTAAATCTTCCCCCAGAACTAACGCAAATTCCTCCTGTAAAAGAAGAAGATGATGCTGAAACTACCGTAACAGATCCGGGGGAGAGAGGAGAGGCAAGCGAAGAAATAAAGATTGAAGATAGTAGCAGCGACGATGGCCACGAAAATGATAACAATGATGATGCTGATGAAAAATCGGATTCCGATAAAGAAGCGTCGGACTTTTCGAAAGATGATTCAGATTCCGATTACAACGAACCACTTGCGAAATCTAAAAAGAAAGTTAAAGTTCAGCCAAAAAAGAAGGTAGAAGAAAGCAACAAATTCGCATGCGACATTTGCGCTAAAAAGTTTGCTCgagatgaaattttgaaggCCCACAAACGATCGCATTACGGCGATACATCGAATAAATGTGAAATTTGTCAAAAAGCTTGCAAATCACTGCTATCTTTAGTGAACCACTTGAAATCCCACGATGAAGACAACGAAAAAGTTATGTGCGAAACCTGTGGACTCAGCTTCAAAACTTCTGGAATGAAAGCGCATAAAAAGGCTTGTTCAAAGAAAGTTTCCACGCTCTCGAGCGATAAAGTGAAGAGGCCTCCTAGAGGAAAAGCCCAATTTTCATGCGACATTTGTGGAAAATCGTACAGTCAGCAATTGTACGTAGACATGCATAAGAAAAAGCATGAGGGATTAAATCCTTACGAGTGTGAGGTTTGTAAAAAAGATCTTAAGAACAGCAGCAACTTGGCCGAACACTTCCGCACACACACAAAAGAAAAACCATTTGTCTGTGAGACGTGCAGCAAGGGATTCAAATCAAAGGCTGATCTCGGAAAACACATCCGTATCCATACAGGGGAGAAACCTTATCAATGTGACCTGTGTCCAGATAAGTTCCGACTGTCCCAACAGCTCAAAACTCATCGATTAATTCATACAGTTGATTTTGGCAACACAATAACTGAAACGGACAAGTTTTGGTGCCGAGACTGTAACAAAAAGTATGAATGTGTAGATGATTTGAAGAGACACATCTTGCGACATACCAACGAGCGCCGATTTGAATGCCCAGACTGTCATAAAAGGTTCAAAACATCGACCCACATGAAGACGCATCAGAAGACACATAGCGGAGAGCGCCCATTCCTTTGCGAGGTATGTTCGAAGACGTTTACAACCCCTGGAGATTTGAAAGTCCATGTCCGAACGCATACCGGGGAAAAACCCTATAAATGCGACCAGTGCCCTCGGGCATTTACGGTCAGTACACGATTAAGGAAGCATAAAGAGGAGAAGCACGAGAATATTCCTAAAAAGAAACCATATCCTTGTTCAATCTGCGGCAAAGCATTTTCTCTGTCCGCCAACATGAAGATGCACGAACGGACACATACCGGTGAAAAGCCCTATAAATGCGACATGTGCCCTAAGGTTTTCTCAGCTCCGAACGGGTTAAAGAAGCACAAAGAAAGCCACATGTCAAGTCAATACAAAGTGAAACCATTTTCCTGTTCTCATTGTCCAAGTACTTTTACCACATCTTGGAACCTGAAGGTTCATCTTAGAGGTCACGGACTTCAGCATAAGGAAGTGGTCAAATGCACATGGTGTCCCAAGGAGTTTGTGTCCTTCAGTCGATTGAAAAAGCATTATTTGGATAAGCATCAGCACTTACAGGATGACAGCAATTCGgAAATGCGACCGGAGAAGAAAAACACGCAAACGCAAAACCGGCTCTCTCAAAAACATTCTTGA
- Protein Sequence
- MDVECIVDIKEEPDDEDEFRSAHSETLFVREEYYDFNNILNDVPAINLPPELTQIPPVKEEDDAETTVTDPGERGEASEEIKIEDSSSDDGHENDNNDDADEKSDSDKEASDFSKDDSDSDYNEPLAKSKKKVKVQPKKKVEESNKFACDICAKKFARDEILKAHKRSHYGDTSNKCEICQKACKSLLSLVNHLKSHDEDNEKVMCETCGLSFKTSGMKAHKKACSKKVSTLSSDKVKRPPRGKAQFSCDICGKSYSQQLYVDMHKKKHEGLNPYECEVCKKDLKNSSNLAEHFRTHTKEKPFVCETCSKGFKSKADLGKHIRIHTGEKPYQCDLCPDKFRLSQQLKTHRLIHTVDFGNTITETDKFWCRDCNKKYECVDDLKRHILRHTNERRFECPDCHKRFKTSTHMKTHQKTHSGERPFLCEVCSKTFTTPGDLKVHVRTHTGEKPYKCDQCPRAFTVSTRLRKHKEEKHENIPKKKPYPCSICGKAFSLSANMKMHERTHTGEKPYKCDMCPKVFSAPNGLKKHKESHMSSQYKVKPFSCSHCPSTFTTSWNLKVHLRGHGLQHKEVVKCTWCPKEFVSFSRLKKHYLDKHQHLQDDSNSEMRPEKKNTQTQNRLSQKHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -