Mcic017061.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Mochlonyx cinctipes
Gene Symbol
-
Assembly
GCA_001014845.1
Location
JXPH01066159.1:1040-4189[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0022 0.092 13.4 4.1 1 23 107 129 107 129 0.99
2 16 6.6e-06 0.00028 21.4 1.4 1 23 135 157 135 157 0.99
3 16 5.7e-07 2.4e-05 24.7 1.1 1 23 163 186 163 186 0.98
4 16 0.092 3.8 8.3 0.1 3 23 208 228 206 228 0.93
5 16 0.00011 0.0044 17.6 0.5 3 23 236 256 234 256 0.97
6 16 4.5e-06 0.00019 21.9 0.9 1 23 302 324 302 324 0.99
7 16 3.9e-06 0.00016 22.1 2.3 1 23 330 352 330 352 0.98
8 16 0.0054 0.23 12.2 0.6 1 23 388 410 388 410 0.99
9 16 1.4e-05 0.00059 20.3 1.1 1 23 416 438 416 438 0.99
10 16 0.06 2.5 8.9 0.6 2 23 474 495 473 495 0.91
11 16 8.8e-05 0.0037 17.8 2.9 1 23 501 525 501 525 0.91
12 16 5.8e-06 0.00024 21.5 2.0 1 23 609 631 609 631 0.99
13 16 0.0001 0.0043 17.6 2.9 1 23 637 659 637 659 0.98
14 16 0.026 1.1 10.0 5.9 1 23 744 766 744 766 0.97
15 16 1.2e-06 5.1e-05 23.7 2.3 1 23 772 794 772 794 0.99
16 16 0.00072 0.03 15.0 0.2 2 23 801 823 800 823 0.96

Sequence Information

Coding Sequence
ATGATGGAAACGCTaaaattacaacaaaatttGGGTGCATCGCAAAACCTACACCACGGACACGAAGATCGCAAAATCCAAAATGGAACCGAAACGGGAGAGCAGCAAGAAATTGTGGTTCCGATTGGTTCCGATCATATAAACTTTTTGACCACCGTAATTTCTGATGATGAATCAAATGGTGATTTAGATCAAGATTTTATCGATCCGATGTCTATGCtagaaaatgaaatgaaggAGGAGGAGGGGGAAGAAGAAGAAGTGGAGCCAGAGGAGATTCCACAACCAACAACAAAACGAAAGGGAAGCAGACGAATTTATAGATGCCGTCATTGCAGTAAGACATTCTCTTGGCTCAAATCTTTAACAGTGCACGAAAGAACGCACACTGGCGAAAAGCCTTATCAGTGTAACCTTTGCTCACGAGCCTTCGTCCGTTCAGACTATTTAAAATATCATATAAAATCACATTCCAACGAAGAGATATTTAAATGCGAGGAATGTAATGTAGTATTCTCTACATCAAGGACACTTCAAAGGCACATGAAGTCCGAACATTACGGAGCTGCTCCCCACAACAACACTTTGACAGACGCTGGAGATGATGAAAATATCCTAAGCTGCATTTATTGTGATGAAACGTTCGACGATGAAGCCAAACAGCAGGCACATCTAAAAGTCCATGATGGTTCCATGCCTTATGGGTGTGATTTGTGCACTAAATCGTTTATCAGACCAGACTACCTcgaatatcacagaaaaagtcATGCAACTCAACCAGAAATTGAGGCCGAAGATGATTCGGATGAGGAAAAAGTTGAAATAGCTCAACCGAATAGGAATGTTCAAAACAGCTTACTTGCTCAGCTTCTAACTAGAGTGGAAAAGACCGAAGATAATCGGTTTCAATGTCCCGATTGTGTGAAAACGTTTGCACATGATGCAACGTTAAAGATTCATCTTAGGACACATACAGGCGAAAAACCATTTTCTTGTTCAATATGTAAAGAAAGGTTTATACGGTCAGATTATTTAAAATCGCACATGAAGCGTCACGTTGACGACGACCCCGAGAACCTAATGGTACAGACTTGGAAGAACATGGAGGAGGAAAAGCAACCAGTTGAGCCACAAATGTACACTAAGACTGAAGAAGGCAAATTCCAGTGCAATGTCTGTGAAAGAATTGTGGCGCATTTGCAAACAATGAAGATACATCTCAGAATACACACAAATGAGAAACCGTACCGCTGTTACGTTTGCACCGAAGCTTTTATCAGATCTGATTATCTGAAAATGCACATGAAATCTCATTTCAAAGATGGCACACTGAATAACGGCCTTGAAATGCAGACTGGAGCCGTAACTGAGCAGGAAGAAGTCGATCCAAATTTCACTCAAATGGAAAACGGGCGTTGGGTGTGCAACATTTGCGATAAAGTTATGCAGCATAATGCCTCTTTAACGCAGCATTCTTTATTCCATTCTGGCGAGCGGCCATACCACTGTGACGTGTGCGATAAATCTTTTGTGCGTCTAGATTATCTGAAGGAGCATTACAAATCGAAAAGGCATCGCGCCCTGCAAGAGCAGGGGGTAGAAGCAGCGCTACAGGAGAAATTGGAAGAAGTTATTATGAAAAACCACGATTTGCGAGGTGAAGAAGAAGGAGATGAAGAGCAAGAGGAAGAAATGCCCGCGGAACCACCAGAACCAAAAAGATTCAAGCCTAATTTTCCAACTAGATCTACAAGATTGATTGTATTCCCGAAAACGCTGTCACTCGCTGAGAATGTAACGTTCCAGCGGACAGATAATGGGCGCTATAAATGTTCGTTTTGCGAGAAGTCATTCATAACATCTACAACATTAAAGGTCCACCTGAGGCTTCACACGGGAGAAAAACCCTACAAATGTAGGAAGTGCCGGAAGGCATTCATCAGATCTGATTACTTGAAGACTCACGAAAAATTGCACAAGCAGAATAATCAAGAGTCCTTCCTTAACCTGTTCTCGTTGACATCGAAAGAAAATACTTCTTGCGAAAATACTGACGAAGATGTCGATTTGAATGCTGATGTTGTTGATGACGAGATTTTCGAAGAGGAGGAGGAAGAAGTTTTCTTCCCATTCGACGAGGTAACTTCCGAAGATACGCCAGTAAAAAGTGAGCCACTCTCTGAGGAAGAGTCTGAGAGAGAAACAGAAGTCGAAGATAAAAGAGCCAAACATTGTTGTCATTTATGTGAGAAACGTTTCGTCTGGccaaaatctcttaaaatacACGTCAGAACGCACACCGGAGAACGTCCGTATAAATGTGATGAATGTAACAAAGCATTCaatagGACCGATAGCCTTAGAAGCCACCGGAAGActcattttattgaaaaaaatgtatcctGTAATATTTGCGATGCCAAGTTTGTACTTTCCAGCAGTCTCGCAAAGCACAAGAAGAGTGTGCACAACATTGACGaaggaaattaa
Protein Sequence
MMETLKLQQNLGASQNLHHGHEDRKIQNGTETGEQQEIVVPIGSDHINFLTTVISDDESNGDLDQDFIDPMSMLENEMKEEEGEEEEVEPEEIPQPTTKRKGSRRIYRCRHCSKTFSWLKSLTVHERTHTGEKPYQCNLCSRAFVRSDYLKYHIKSHSNEEIFKCEECNVVFSTSRTLQRHMKSEHYGAAPHNNTLTDAGDDENILSCIYCDETFDDEAKQQAHLKVHDGSMPYGCDLCTKSFIRPDYLEYHRKSHATQPEIEAEDDSDEEKVEIAQPNRNVQNSLLAQLLTRVEKTEDNRFQCPDCVKTFAHDATLKIHLRTHTGEKPFSCSICKERFIRSDYLKSHMKRHVDDDPENLMVQTWKNMEEEKQPVEPQMYTKTEEGKFQCNVCERIVAHLQTMKIHLRIHTNEKPYRCYVCTEAFIRSDYLKMHMKSHFKDGTLNNGLEMQTGAVTEQEEVDPNFTQMENGRWVCNICDKVMQHNASLTQHSLFHSGERPYHCDVCDKSFVRLDYLKEHYKSKRHRALQEQGVEAALQEKLEEVIMKNHDLRGEEEGDEEQEEEMPAEPPEPKRFKPNFPTRSTRLIVFPKTLSLAENVTFQRTDNGRYKCSFCEKSFITSTTLKVHLRLHTGEKPYKCRKCRKAFIRSDYLKTHEKLHKQNNQESFLNLFSLTSKENTSCENTDEDVDLNADVVDDEIFEEEEEEVFFPFDEVTSEDTPVKSEPLSEEESERETEVEDKRAKHCCHLCEKRFVWPKSLKIHVRTHTGERPYKCDECNKAFNRTDSLRSHRKTHFIEKNVSCNICDAKFVLSSSLAKHKKSVHNIDEGN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-