Mcic001009.1
Basic Information
- Insect
- Mochlonyx cinctipes
- Gene Symbol
- -
- Assembly
- GCA_001014845.1
- Location
- JXPH01057076.1:887-3313[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 1.1 47 4.9 0.2 8 23 32 47 25 47 0.87 2 23 3.1e-05 0.0013 19.3 2.4 1 23 103 125 103 125 0.97 3 23 3.7e-05 0.0015 19.0 0.6 1 23 137 160 137 160 0.98 4 23 0.00024 0.01 16.5 0.4 1 23 167 189 167 189 0.98 5 23 1.6e-07 6.7e-06 26.4 3.5 2 23 196 217 195 217 0.97 6 23 0.0012 0.052 14.2 0.4 1 23 223 245 223 245 0.96 7 23 4.3e-06 0.00018 22.0 3.5 1 21 257 277 257 278 0.95 8 23 2e-06 8.4e-05 23.0 5.5 1 23 283 305 283 305 0.98 9 23 0.0011 0.044 14.4 0.2 1 23 311 333 311 333 0.98 10 23 0.0055 0.23 12.2 1.6 1 20 339 358 339 360 0.96 11 23 3.5e-05 0.0015 19.1 0.7 2 23 369 391 368 391 0.94 12 23 0.0023 0.097 13.4 1.6 1 23 397 419 397 419 0.98 13 23 6e-06 0.00025 21.5 0.4 1 23 424 447 424 447 0.97 14 23 5.6e-06 0.00023 21.6 6.8 1 23 455 477 455 477 0.98 15 23 0.013 0.52 11.1 1.6 1 23 483 505 483 505 0.97 16 23 0.021 0.86 10.4 1.2 1 21 511 531 511 532 0.93 17 23 0.00046 0.019 15.6 5.1 1 23 540 563 540 563 0.96 18 23 1.6e-05 0.00066 20.2 2.1 1 23 569 591 569 591 0.97 19 23 0.0071 0.29 11.8 3.1 1 23 597 620 597 620 0.94 20 23 4.7e-07 2e-05 25.0 3.0 1 23 628 650 628 650 0.98 21 23 0.0022 0.092 13.4 1.6 1 23 656 678 656 678 0.98 22 23 0.00033 0.014 16.0 0.8 1 23 684 707 684 707 0.96 23 23 0.00018 0.0073 16.9 7.2 1 23 715 738 715 738 0.94
Sequence Information
- Coding Sequence
- ATGAGCTCAACATCTTCTGCTACTTTTACACAGCAACATGAAGCTCTTCAAGTTCCAAGTTTGAAGTCAGAATTTTATTGCGATAATTTTAACCAAGCATTCGAAACACAATCTGAATTTGAAGATCATAAGAAAATTCATGAAAACAAATCGCCAATATCAATTCAGTGCCCTATCGAATTTCTAACAGCTGCGGAAAACAATTCAAGCTATGTAATGAATGCAGCATACGTTCAACGTACTTTATCCCCTGCTACTGCTACACAGAAACATGAAGTTCTTCACTTTCCAAGTTTAAAGTCAGAATTTGATTGCGATCATTGTACTCAAGCATTCAAAACACAATCTGAACTTGAAGATCATAAGAAAATGCATGAAGATAAAGCGCCTAAAATAAATGAACGCCTTTTTGAATGTCAGATTTGCGATGTACGCTTCACGGAAGCCACTTCTTTCCAATCTCACATGAGAATAAAACATGTGAGTTACAAAAAGCAGTTCCCCTGTCATGTTTGCGGTGAAATTTATGACAAGCAAATTGACCTCAAATTGCATCTACAAAGCCACAAAATTAGTACCCATGATGAATGCAATATTTGTAAGAAGAAATTTAGCAGCAAATCTCATCTTACTAGCCATATGAGAGTACATACTAAAGAATGTCCCTACCTTTGTGAGATTTGTCAAGAAACTTTCTCATGGAAAGAAACATTAGATAGACATATGCTTAAACATAATGCTTACCATGACAAAGAAGATGAGAAACCGCACGAGTGTAATATTTGTAAGAAGAAATTTAGTACCAAATCGCATCTTACTAATCATGTGAGGAACGATGAAAAACCACATGAGTGCAATATTTGTAAGAAGAAATTTACGATAAATTCTCATCTTACTAGGCATATGAGAATACATACTAAAGAATGCCCTTTCGTTTGTGAGATTTGTCCAGAAAAGTTCACATGGAAACCAACATTAGATAGACATATGCTTAAGCATACTGgagaatataaatttaaatgtgaATTTTGTAAGAAACCATTCGCGGAAAAACGTTACTTCCAAACCCACTTGATTTTCTGCGAGAAAGATGACAAATCGAACAAATGTAATATTTGTAAGCAGGAATTTGTCAGCAAATCTTATCTTACTAATCACATGACGGCAGTTCATTTTAAAGAATGCCCTTATGTCTGTGAGATTTGTCAAGAAAAGTTCCCATGGAAAAAAAGCTTACATACACATATGCTTAAACATGGACAGTATAAATTTAAGTGTGAACTTTGTAACAAACCATTCGCTCAAAATAGTTCCTTGCAATATCATTTGATTTCCGATCACGGTAAAGAAGATGAAAGATCGCACGAGTgcaatatttgtaaaaaaaaatttaatacaaattccTGTCTTACAAGGCATATGAAGGTACACACTAAAGAATGCCCTCACGTTTGTGAGATTTGTCAAGAAAAGTTCACATGGAAACAAACGTTAGATACACACATGCTTAAACATACTGGAGAGTATAAATTTAGGTGTGAATGTTGTGATAAACCATTCGTTCAAAAACGTTCCTTCCTAGCCCACTTGATTCGCTGTAAGAAAGATGAGAAATCGCATGAGTGCAATATTTGTAAGAAGAAATTTACAGAAGATTCTTATCTTACTAGGCATCATATGAGGGTACATGCTAAAGAATGCCTTCACGTTTGTGAGATTTGTCAGGAAAAGTTTAGAAGCAAAGACACATTAGATAGACATATGCTTAAACATACAGGAGAGTATAAATTTAGGtgtaaaatttgtgaaaaaccaTTTGCGGAGAAACATCTGTTGCACTAtcattttatttctattcaCGGTAAGGAAGATGACAAACCGCACGAGTGCAATATTTGTAAgaaaaaatttatcacaaaatctGATTTTGCAAGGCATATGAGGGTACATTCGAAAGAATGCCCGTACGTTTGTAAGATTTGTCAAGAAAAGTTCTCATGGAAACAAACATTCGAAAGGCATTTGCTTAAACATACTGGTGACTATAAATTCATTtgtgaattttgtaaaaaaccattcgtaaaaaaatatttgttgcaaTATCATTTAATTTCTATTCACGGTAAAGAAGAAGACAAGCCTCATCAGTGTCATGTTTGCCAGAAAAGATTTACTAGACGAAACCAATTGAAACGTCATTCTATCAAAACACATGCCACAGATGCAAACTTTAGTGTGAATTAG
- Protein Sequence
- MSSTSSATFTQQHEALQVPSLKSEFYCDNFNQAFETQSEFEDHKKIHENKSPISIQCPIEFLTAAENNSSYVMNAAYVQRTLSPATATQKHEVLHFPSLKSEFDCDHCTQAFKTQSELEDHKKMHEDKAPKINERLFECQICDVRFTEATSFQSHMRIKHVSYKKQFPCHVCGEIYDKQIDLKLHLQSHKISTHDECNICKKKFSSKSHLTSHMRVHTKECPYLCEICQETFSWKETLDRHMLKHNAYHDKEDEKPHECNICKKKFSTKSHLTNHVRNDEKPHECNICKKKFTINSHLTRHMRIHTKECPFVCEICPEKFTWKPTLDRHMLKHTGEYKFKCEFCKKPFAEKRYFQTHLIFCEKDDKSNKCNICKQEFVSKSYLTNHMTAVHFKECPYVCEICQEKFPWKKSLHTHMLKHGQYKFKCELCNKPFAQNSSLQYHLISDHGKEDERSHECNICKKKFNTNSCLTRHMKVHTKECPHVCEICQEKFTWKQTLDTHMLKHTGEYKFRCECCDKPFVQKRSFLAHLIRCKKDEKSHECNICKKKFTEDSYLTRHHMRVHAKECLHVCEICQEKFRSKDTLDRHMLKHTGEYKFRCKICEKPFAEKHLLHYHFISIHGKEDDKPHECNICKKKFITKSDFARHMRVHSKECPYVCKICQEKFSWKQTFERHLLKHTGDYKFICEFCKKPFVKKYLLQYHLISIHGKEEDKPHQCHVCQKRFTRRNQLKRHSIKTHATDANFSVN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -