Mcic010521.1
Basic Information
- Insect
- Mochlonyx cinctipes
- Gene Symbol
- -
- Assembly
- GCA_001014845.1
- Location
- JXPH01017355.1:6858-7666[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.9e-18 8.9e-15 54.3 0.0 2 45 65 109 64 109 0.95 2 2 4.4 9.9e+03 -3.5 1.8 2 13 130 141 129 143 0.73
Sequence Information
- Coding Sequence
- ATGGTGAATAGCTATCCATCATCAAGCATTTCAACACCAACGTCTCCCCAAGGCGGCAATGAAACTTCAATGGTGCAGAGCGTATACAGTCAAGGTGCGACCCCAAATCAGTCGCCAATTGGCGCTAGCAATCCTGGTGGGTCTTCCTCGATGCCGCCGACGAAACGCAAACGCTCCGTCAATCCACAGGGGGACGAGAATTTTTTAAGGGCTCTGGAGGCAGTCCGGTTTGGTGGAATTGGATTTTGTAAAGCAGCTAGACTGTACGGGGTAAACAATCGAACCTTGTGGCTTGAATATAAGAAACGTGGCTACCCCATTAGTCGACCCAGCATcaaaaatcggataaaattggAGCCCAACATGTCGCCTCCACCATCTACAACACCGACAGCAGCAGCGGCGGCCGCTGCCGCTGTAGCCGCTTCGTCTGCAGCCCCTCTAATGTGCCCACCACACGCACATCCAATGGGAGTTATGGGCTTTTTAGACACAAGACACGTTGATTTCACATCAGCAGCCGCCGGAATTCATCAGATGTCGCGCCAGAGGTATCCAGATGCGACGACAGTCAACATGAATCCTGGCGCTGTCAATTTACAgggtttaaattttaattcaatgtaA
- Protein Sequence
- MVNSYPSSSISTPTSPQGGNETSMVQSVYSQGATPNQSPIGASNPGGSSSMPPTKRKRSVNPQGDENFLRALEAVRFGGIGFCKAARLYGVNNRTLWLEYKKRGYPISRPSIKNRIKLEPNMSPPPSTTPTAAAAAAAAVAASSAAPLMCPPHAHPMGVMGFLDTRHVDFTSAAAGIHQMSRQRYPDATTVNMNPGAVNLQGLNFNSM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -