Mcic018612.1
Basic Information
- Insect
- Mochlonyx cinctipes
- Gene Symbol
- -
- Assembly
- GCA_001014845.1
- Location
- JXPH01011113.1:2669-3367[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.4e-11 5.6e-08 32.6 0.0 4 44 51 91 50 92 0.92 2 3 0.016 37 4.3 0.0 24 35 119 130 104 138 0.86 3 3 4.3e-11 9.7e-08 31.8 0.0 8 39 163 195 158 201 0.88
Sequence Information
- Coding Sequence
- ATGNATAACGAAAGAATTACAGATGAAATTAACAATCAAACACCAGAGGAGACTGTTCCTAAAGCAGAAAGCGACATCGAAGGCAGTTTAAGATCAACAGCAGCAGGAACAAAGAAACGGATGCGTGCTAGATTTTCAGATTATGGTAATCGCTTAGATCAAGCAGTGCGTTCAATTATAAATGATGGTGCTAGTTTTAGAACGGCTTCTATTGAATATGGCATTCCCAAGACTGTTCTATGGcgaagagcccccagatcaccATTCtataaacatgaaaaatatctacCGAGAACACCTAGACAAGATGCTATTGAAGAAATGAAATCAGGAGCTACATTGTTGAGCATAAGTGAAAAATACAAGATACCTTTATCCACACTTCATCGGGATAAAATTCGACTATATGCACAAGGTAATTTACCTGAATCAGTTACACTCAAACAAAGAGATAAAGGAGTAGATTTTAAAGAGAGAGTATTAGTTGCCGCCAGAGCTTGTTTAAATGGAACTGTATCACAGTCAGATGcagcaaaattttataatctaCCGAAAACTACAATTTGGAGACGGATGAAGCAATTGAAAGGAgccgaagaaaataaaaatgcccAGAAAACTACTCCGcagatttttatcaaaaatgaacTGTTAGAAGATGCTGCGGAGGAAGAACAtcttttatttgaagaaaattag
- Protein Sequence
- MXNERITDEINNQTPEETVPKAESDIEGSLRSTAAGTKKRMRARFSDYGNRLDQAVRSIINDGASFRTASIEYGIPKTVLWRRAPRSPFYKHEKYLPRTPRQDAIEEMKSGATLLSISEKYKIPLSTLHRDKIRLYAQGNLPESVTLKQRDKGVDFKERVLVAARACLNGTVSQSDAAKFYNLPKTTIWRRMKQLKGAEENKNAQKTTPQIFIKNELLEDAAEEEHLLFEEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -