Mcic018141.1
Basic Information
- Insect
- Mochlonyx cinctipes
- Gene Symbol
- -
- Assembly
- GCA_001014845.1
- Location
- JXPH01082866.1:95-1956[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.7e-11 3.8e-08 33.1 0.0 2 39 106 144 105 148 0.90 2 4 9.4e-06 0.021 14.7 0.1 2 26 160 184 159 186 0.93 3 4 5.5e-13 1.2e-09 37.8 0.0 10 45 184 220 183 220 0.96 4 4 1e-17 2.3e-14 53.0 0.0 1 43 227 270 227 271 0.96
Sequence Information
- Coding Sequence
- ATGTCTTCTACAACAATATCTTCTGCTGATAACAATGTTGATATAAAACCCAAAATAAATCATTTGAAGCAAGAATTGATTTCTGAAAATGACAATAACATGGATGTAGAACAAGACCACGAATCGATGCATGGGATGGTTGTAACACCAGAAATTTCTGGCATGATGAACACGAATCAAATGGATATTTACCAATCAGATACTAGCGAAGActcaaaaattggtattttggaTGGATCATCACTACAATATACAAATTTAACAAGTCCTAATCCAAACGATCCAAAAACTCCAACTGGACCTAAAACGTGGACTGCTGAAGATATGGAGAGTGCTTTAGACGCACTTCGTACGCATAACATGAGTTTAACAAAGgCTTCAGCAACATATGGCATTCCATCGACTACATTGTGGCAACGTGCACATCGACTAGGTATCGATACACCTAAAAAAGAAGGTCCTTCTAAAACATGGAATGAAGATTCATTGAATAGTGCCCTGGAGGCTTTAAGAACTGGAACAATATCAGCGAATAAAGCCTCTAAAGCTTTTGCAATTCGTGCTGGACAATCATCGGTTCAGAAAGCCAGTACAGAATTCGGAATACCAACTGGGACATTGTATGGCCGATGCAAGAGAGAAGGAATTGAACTTTCAAGATCAAATCCTACTCCTTGGTCAGAAGATGCAATGATGGAGGCTTTAGAATCTGTAAAaCAGGGTCATATGTCCATAAACCAAGCTGCCATACATTATAATTTGCCATATAGTTCACTATATGGCCGATTCAAACGTGGAAAATATGATACTCCAGGAAATGTGCCGTCTACAGGAATTGGAAATAATAATGTAGTCGGTAGTCCTGGAATGGAATTTAAAGTTGAGCCACAACAAAATGAACATAGTCCAGAAAATACGCAACATTTTAATCCTGCAATAACAACGCCTACATCATCAAATACGCAAACCCACCACGTTCATTCACCCTCACCAGTGAATATTCACATCATAAATTCAAATCACCATCAAATTCAgcaacatcaacaacaacaacaacagcaccAACAGCCACAACAACATCATTTACATCAACCGCAACTAATTCAACATCACATCATTCCTCAACAACATCACCAACCAATAATTATACATCAACAGCAAATGCAACAAATTCAACAACAGCCACAATATCATCAAATGTATCATGTTATCAAACAAGAACCTGAAAGAAgttga
- Protein Sequence
- MSSTTISSADNNVDIKPKINHLKQELISENDNNMDVEQDHESMHGMVVTPEISGMMNTNQMDIYQSDTSEDSKIGILDGSSLQYTNLTSPNPNDPKTPTGPKTWTAEDMESALDALRTHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPSKTWNEDSLNSALEALRTGTISANKASKAFAIRAGQSSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMMEALESVKQGHMSINQAAIHYNLPYSSLYGRFKRGKYDTPGNVPSTGIGNNNVVGSPGMEFKVEPQQNEHSPENTQHFNPAITTPTSSNTQTHHVHSPSPVNIHIINSNHHQIQQHQQQQQQHQQPQQHHLHQPQLIQHHIIPQQHHQPIIIHQQQMQQIQQQPQYHQMYHVIKQEPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -