Mtil003475.1
Basic Information
- Insect
- Mimas tiliae
- Gene Symbol
- -
- Assembly
- GCA_905332985.1
- Location
- HG995264.1:8358618-8361717[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 7.7 5.3e+02 1.8 0.5 12 23 181 192 180 192 0.87 2 12 0.24 17 6.5 1.6 2 23 302 324 302 324 0.95 3 12 0.14 9.6 7.3 4.5 1 23 330 353 330 353 0.96 4 12 0.034 2.4 9.2 0.8 2 19 358 375 357 378 0.93 5 12 0.11 7.5 7.6 2.1 1 23 387 410 387 410 0.94 6 12 0.066 4.5 8.3 0.4 1 10 414 423 414 437 0.72 7 12 3.6e-05 0.0025 18.6 1.9 2 23 480 501 480 501 0.97 8 12 4.2 2.9e+02 2.6 4.7 2 23 531 553 530 553 0.95 9 12 0.00022 0.015 16.1 3.1 1 23 559 581 559 581 0.98 10 12 0.013 0.89 10.5 0.4 3 23 588 608 586 608 0.96 11 12 0.13 8.8 7.4 0.6 1 23 614 637 614 637 0.86 12 12 0.0011 0.073 13.9 0.1 2 23 643 665 642 665 0.95
Sequence Information
- Coding Sequence
- ATGGGCCGAGAAGAATATAATTCAGTACTCAGTGACTCTTTAAAGCTGAAACTACGTAATATATTGCGTTACGATCATTTCTGTGGTATATGCACTGAGGTCGACAGTAACATGAGTCTAGTAAATGAAGTAGTTGAAATTCTCACTGATTGTTGGACGGAGACTGCGGTATTGAAGGATGTTATTGAGGAAGTATTTAATGATGTTGAAAACATCTTCCTTAGTCCACGTATATGCAATACTTGTATGGAGAAACTAATACAATCATACATTTTTATATGCAACACAAGAAAAACTGCTAAAATATTAGCCCATTACACCAATGAGTTATGTTTTAAATCTATTGATTTAAAGGAGCATAGCAAACTTGATAAATCCAATGTTGTTATTGCTTTAGACACAGATTATTCTATCAGTAAAAAAATAATAAATGATGAAAATAAATGTACCAATTTAAGTGCATATCTAACACAACAAAGAGTTAAAAAAAACATATTAGATACAAAAAATGTCAAAAATGAAGTAAAATATGGTAACAAAAGGCTACAATATTTAACAGCACATTATAAAACACATTTGAAAGTTAAATGTAAAATATGCAGCCAAATTGTTCCATGTGAAAAATTTAAAAGTCATTTAAAATATGATCATCAAAATATCGCCCATATCTGTAATAGATGTAACAGTATTTTTTATTCTGAAAATGGGATAAGAACTCATAAAAAATTCTGTCATACAATTAAAGAGGAACAATGTGTAATGTGCTTGGAAAAATTCTCTGAAGATGAATTAAACTCACATGATTGTAAATTTAATTGCCCTGAGTGCGTTCAAATGCCTTGCATACATCATAAATATCTATTATCATACAGAGAACAGATACTAAATCACACATCCAAAGCTAAATGCTTAGATTGTGATTATGTGTGTACAAAGAAGGAAATTTTACTCAGTCACGTGAATATGAAACATTTAGACCACCATCCATACACTTGTGATAGATGTGGGCAACAGTTCTACTCAAAATGTATACTTAAAAGTCATATCTACAGATTCCATCAAGATTTAGACCGTTGCATGTTCTGTGATTGCGAATTTAGTAGTAAAGCCTCTTTGAACGAACATAATATATCAGAGTGTGGAAATATTCAGCGACAATATACTTGCGATAAATGTCCCGCATCTTTCGACACTGTGGAGCAACATAGAAGGCATAAAATAAGAAGACATACAAATATATTTCCTTGCCCCATCTGCAATAAGACATTTTTGAAAGTTGTCAAGCGTAAAGAGCACCTAATAAAAGTACATAAAGGTATACAAATTAAGAACAAAATACAGATTACTGAACGTCATTTAAGTGAGCAAAAATATGATAAAAGAAATGAAAGTTTGAAAAGACATGGCTCTAACTTATGTGACCTTGATGATTCTGCCACTTGTGAAACATGTGGACGGTCATTCCAAAACTTTGGTTCATTAAAACGGCATCAAAAACTACACTTAGACACTACAGTCAACCCTAAATTGGGAAGGAATTGGAAGAAAAATGATCCTATTTTAGGAAGGTACAAACAAAGACCAATCCTAACATGTAATTCTTGTAACCACACTACAAGGAGTAAAATACTTCTAGAATGTCATATAAATAGGAATCACTTAAAAATTAAGCCTTATGTCTGCCATATATGCAGCAAAGATTTCTTTGGGAAAAATTTATTAAGGAAACACTTAACAACCCACTCCGATAAGAATGTAATATGTATGATATGTGGCAAGAAATTGGCAAACGGTGCTTGTTTGAAAATGCACCTACGTCTTCACACAGGTGAGACACCGTATTCCTGTGATATCTGCGGAGATAAATTCCGTTCATCAAGTATAATGAATGTGCACAAAGTGAAGAAACATTCAGATAAAACTTCTGTCTGCCCTTTATGCAGTACTAAGTTTTACACAGTGGGAGAATTGAGGCGGCATGTGATCAGGGTACATTGGAAACATAAAAATAGAAAGTTTAATCCAAAAGAGTTGAAGGGTTTAGAAGACCATTATCATTTGTTCCATGATGGCAGACGGGTTGTAGTCAATGAGGGTGATGTGGATTACTATACGCCTTGCAAAGTGGTGAAATCTTAA
- Protein Sequence
- MGREEYNSVLSDSLKLKLRNILRYDHFCGICTEVDSNMSLVNEVVEILTDCWTETAVLKDVIEEVFNDVENIFLSPRICNTCMEKLIQSYIFICNTRKTAKILAHYTNELCFKSIDLKEHSKLDKSNVVIALDTDYSISKKIINDENKCTNLSAYLTQQRVKKNILDTKNVKNEVKYGNKRLQYLTAHYKTHLKVKCKICSQIVPCEKFKSHLKYDHQNIAHICNRCNSIFYSENGIRTHKKFCHTIKEEQCVMCLEKFSEDELNSHDCKFNCPECVQMPCIHHKYLLSYREQILNHTSKAKCLDCDYVCTKKEILLSHVNMKHLDHHPYTCDRCGQQFYSKCILKSHIYRFHQDLDRCMFCDCEFSSKASLNEHNISECGNIQRQYTCDKCPASFDTVEQHRRHKIRRHTNIFPCPICNKTFLKVVKRKEHLIKVHKGIQIKNKIQITERHLSEQKYDKRNESLKRHGSNLCDLDDSATCETCGRSFQNFGSLKRHQKLHLDTTVNPKLGRNWKKNDPILGRYKQRPILTCNSCNHTTRSKILLECHINRNHLKIKPYVCHICSKDFFGKNLLRKHLTTHSDKNVICMICGKKLANGACLKMHLRLHTGETPYSCDICGDKFRSSSIMNVHKVKKHSDKTSVCPLCSTKFYTVGELRRHVIRVHWKHKNRKFNPKELKGLEDHYHLFHDGRRVVVNEGDVDYYTPCKVVKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -