Mtil014604.1
Basic Information
- Insect
- Mimas tiliae
- Gene Symbol
- -
- Assembly
- GCA_905332985.1
- Location
- HG995266.1:3098938-3106567[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.33 23 6.1 0.9 1 23 222 245 222 245 0.92 2 10 6.5 4.5e+02 2.0 0.9 3 23 254 273 252 273 0.71 3 10 0.054 3.7 8.6 0.7 1 23 277 300 277 300 0.97 4 10 0.00017 0.011 16.5 4.9 1 23 338 360 338 361 0.96 5 10 3.4e-06 0.00023 21.8 0.7 1 23 365 387 365 387 0.97 6 10 0.32 22 6.2 0.3 2 23 395 415 395 415 0.92 7 10 0.0013 0.091 13.7 0.2 2 21 422 441 421 446 0.93 8 10 1.2e-05 0.00083 20.1 0.8 1 23 454 477 454 477 0.96 9 10 0.018 1.2 10.1 0.9 1 19 483 501 483 501 0.95 10 10 8.1e-05 0.0056 17.5 2.1 2 23 520 542 519 542 0.95
Sequence Information
- Coding Sequence
- ATGACTGAAGATTCTTCAGAGATGGTGTTGAAGAAGCTCTGCTGTACATGTTTGAGTAATAATCGCAAGTTGTTTCTACTTTGCCGGGTTGATGATGGTGTTAACAATTTGTATTTATTATTGTCTTCGGATGCCGAAGCTTATCGGGAAGGATTCTACAAAGACACAGCATCTCTATTCATATGCTTTGAGTGTAGAGCTATCATGCGAAAGATCAGCCTGTTCAGACAGCAGGCTTGTATTGCACAGAAGAAGTTAACGGCAATTGCAGAAGGACGCACTGATGCCAAGTCATCCCAATGCTTATCTACCCTCACGTCTTACCATATTACGACAGTGGAGACTGTGACGTCACTCGATGCAGTGACGTCACCTGCTAGAGATGAAGACACATTTGTGGACTGTGGGCCTGAGTTAGATATTGATGATGTGCCATTATCTGAACTGCATAGTTATCATGAATGCAATGTTGATAAGTTTTTAGAATCACCGCTCAACGGTATAAAACAACACTCAAAAGATGTAAAGGAAAAAAAGATAAAAACAAGAAAGGTAAAAAAGAAAATAAAGGAAAAATACTTTACTGTCACAAAGATAACAGAAGAAGAAATGTCAGAGTATAGGAATAGGAGATGCTTAAATAAAACTTATGTGGAAGCGAATTATAAATGTTATTATTGTTTGGAAGGGTTTCAAGTTTTGACAGAATTTGAAAAACATAATGAAGTGTTTCATACCGAGAAAGTTGACCACACTCGCTGTGACAAATGCTATACATACGTTCCCAGTACGTCTCTAGAGGATCACACAAGCACTCACTATCAGAAATATAGTTGTCAGTTTTGTGATTACAACACTTATGTACTAAACGATGTTATGAAGCATTTAAGGAGTGGACACAGCGTGAAAAGCGTTTGGAGGAAGGGTCATAACATAACTGCTCAAGTGAAGAATCCAGTATTACAGCGGGGTCGAAACAGAATTCTTACCGACAAAAGGACACCGAACGGATATAAATGTCCCAATTGTGATAAATATTTTGATAACAAAAACCTAAGGTATAAGCATATAAGAAGACACCATAGTGAAGGATTCTCATGCAGTGTTTGTGGGAAACGGTATCCATTCAAAGACAATCTCATTAAACATGAAAGACTGCATCAAGGTCCTCTCCCTCGCGAGGAGTGTCCCATCTGCCACAAGATGATCAGGATCGATCTGGTGCGTACACACGCCAGGATCCACTCCGCAAGGGAAACTATAACGTGTGTCGAGTGCGATAAGAGCTATATTAGCAGAGCGTCGTATGAGAATCATTTGAAGTACAGCCAGGCGCATGCGTCGCAGGACGTGCTGAAGTACAAATGTTCGATGTGCGACAAAGGTTACAGATCAAAAGGTGAGCTGCGTGACCATGTCAACTACCAACACCTGGGCAAGACGCAGCACAAGTGCCCCGTCTGCGGGAAGGCACTAGCCACGCGTCGCTGCATCACCCGGCATGATAAAAAAGGTCTTCGCGAGCACGAGTTTATTCATACAGGAGAGCGGCCTCTCTCATGCGAAATATGTGGGTGTACTTTTAGACAAAGCGCGTCCCTATACACACATAAAAAGAGAGTGCACAAAATATACCCTCAGAGGAAGAGCGTCGAACTAGTAGAGCCGAGTTGA
- Protein Sequence
- MTEDSSEMVLKKLCCTCLSNNRKLFLLCRVDDGVNNLYLLLSSDAEAYREGFYKDTASLFICFECRAIMRKISLFRQQACIAQKKLTAIAEGRTDAKSSQCLSTLTSYHITTVETVTSLDAVTSPARDEDTFVDCGPELDIDDVPLSELHSYHECNVDKFLESPLNGIKQHSKDVKEKKIKTRKVKKKIKEKYFTVTKITEEEMSEYRNRRCLNKTYVEANYKCYYCLEGFQVLTEFEKHNEVFHTEKVDHTRCDKCYTYVPSTSLEDHTSTHYQKYSCQFCDYNTYVLNDVMKHLRSGHSVKSVWRKGHNITAQVKNPVLQRGRNRILTDKRTPNGYKCPNCDKYFDNKNLRYKHIRRHHSEGFSCSVCGKRYPFKDNLIKHERLHQGPLPREECPICHKMIRIDLVRTHARIHSARETITCVECDKSYISRASYENHLKYSQAHASQDVLKYKCSMCDKGYRSKGELRDHVNYQHLGKTQHKCPVCGKALATRRCITRHDKKGLREHEFIHTGERPLSCEICGCTFRQSASLYTHKKRVHKIYPQRKSVELVEPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00063932;
- 90% Identity
- -
- 80% Identity
- -