Mtil009969.1
Basic Information
- Insect
- Mimas tiliae
- Gene Symbol
- -
- Assembly
- GCA_905332985.1
- Location
- HG995255.1:2941412-2952732[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0063 0.44 11.5 1.4 1 23 382 404 382 404 0.92 2 12 0.054 3.7 8.6 0.6 2 23 412 434 412 434 0.95 3 12 0.015 1 10.4 1.6 1 23 438 460 438 460 0.97 4 12 0.64 44 5.2 0.0 1 23 465 488 465 488 0.97 5 12 2.5 1.7e+02 3.3 0.3 2 23 502 524 502 524 0.93 6 12 0.016 1.1 10.2 0.2 1 22 536 557 536 561 0.90 7 12 0.00031 0.021 15.6 0.5 2 23 580 602 579 602 0.96 8 12 1.1 75 4.5 2.9 2 23 622 644 621 644 0.95 9 12 0.0054 0.37 11.7 1.7 3 23 659 679 658 679 0.96 10 12 7e-05 0.0048 17.7 0.0 2 23 685 706 684 706 0.93 11 12 0.005 0.35 11.8 1.4 1 23 712 734 712 734 0.94 12 12 9.2e-06 0.00063 20.4 1.1 1 23 740 763 740 763 0.98
Sequence Information
- Coding Sequence
- ATGGTTTGCTATTGTTGTGTTAAAGGTTGCAAAAACAACACTAACTTAAAGAAAAAAGATCCCAACTACACGGTTTCATTTCATGCATTTCCAACAAACACAGAACTGAGGATAAAATGGTTGAGAGCAATAGGAAGGCCTACCTGGGAGCCGCCAAATCATGCGCGCATATGCAGCGCACATTTCAGTTACGATCAGATAAGTCACGAAAGCTGCAGGACTAGGATAAAGGAAGATGCATGTCCAGTGAATGCTTTACCTCTCAATTCAAACTTTGAAGCCTCTGATTTGGAAGTGTGCAGAATATGTTTGGCCACTGATGTGAATATGCACAGTTTGCAGGAAGGAACACTGAAGTCATGCATGGAGTCTATAGGTGGTATGAATGAATCTTATAATATTGAAGGATTGCCACAGTTTGTGTGCAGTGAATGTGCAGCTCATTTCATAAGATTTTACCGTTTAGTAGAGAAGAGTGTTATTGCTCAAGCAACCTTGCTTGATATATTTGCGCAACACGGTGAGATAACAAAAAGCTTAATCAAACGCCAAGACAGAAAACAATTAAACTTAGTTTCATCTCTCAACTATTGTAAACAAACTAATATTTATAATTACAATTATGAAAATGGTACTTCTTGTCTTGTGAAATCAGAGTATAAAGACCTAAGTAATTTTACATGTAACATTAAATTAAAAGAAGATTACAAAGGCCTTTTAGTCAAAAATAATGACCATGCTCAAACAGAAAGCATTAATTTAGAAAATATATATCCTAATCATGATAAAAACGAAGAATTAATATCAACTTTTGCCGAACATGATGACAAAGAAAAAATAGTAGAAACCAATAATGGTGGGCATTTAGAAGATTTCAAAATAAACTTTACTGATGATGATTCTCTTTGGGAAGATTGTCATGAAGAACCTGTGGTGAAAATGAGACATAAACACAAAAAAAAGAAAATTCTCGATGATGAAATAACTGAGAATAAAAAAGTGAAGACAAAAAACCCTAATGGATTAACACCGGATGAAATTAATATGCAGGATTACTTCGATATTGTCAAATTATCATTACAGGAGCAAATCGACGAGTGGCAGAAATCCATGGCTCGAAGACACTTCACCAGTGAAACAACATACCGCTGTGATATATGTTCCAAAGTGTTCGCTCATATCAACACCTACAGAATGCATAGCGGCAGCCACGATATTAGACGCGGCAAAGCGGAATGTCCCGTGTGCAAATTGCGCTTTAAGAATGATGTGTTGGTGAATTCTCACAGGAGCCGCACTCACGGAAAGAAATTCTATTGCAAGTCCTGTCCTAAAGTATTTAATAACGTTGCCGTAGCAAAAAAGCACCATCGCTGGCACAGCGGGCACGTGTACACGTGCGGCGCGTGTCCGTTCGCGAGCGCACACGACTCAGCCGTGCGCGCGCACGCTCGCACCGCGCATGCGCAGCGCACCGCTGCCGCCGCCGCCGCCGCCTGCGCCACGTGCGTCACGTGCGGCCGCGCCTGCCTCTCCGCACGGGGACTGCTGCTGCACTACGCCACTGCGCATAAACATATACAGGAAACGGAAGGTAACCCAGCGTTTCTATGTGAACAATGTGACATAAGCTTCACATCGGAGGGCGCTAGACGCGTACATATCTTAACATCCAGCCAGCATAAGAAAAAACCCAATTTGTATGACACAATACCAATTGATCCATCTGTAAAAACGACGTGCAGTAAATGCGGCGTCAAATTTCAGTCGCCTAAGGAACTGATAGACCACACAAGATCTGAACACCGTCGATCACCTCAGAAGAAAACTAGCTGGAGTCTGCCTGGAGATTCTTATCCTACGCAGTGTGAACATTGTGAAGAAACAGTGAATAATCGCAAGGAACATTGGTGGCATGTACGTAAACAGCACCCTAAAGAGAAACACACGTATCAGCCGGTCATAACCGCCATTTGTGAGACGTGTGGAAAAGGATTTCAGAACTCTACCAAGTTACACCTGCACGAGTTGCGTCACGCGTCGCCGCGCGTGCCGTGCTCGGTGTGCGGCCGCGTGTTCTACGACAAGTACGCGCTGGCGAGGCACGCCACACTACACGCCGCCGCGCGCCCGCACGCGTGTCGCGCCTGTCCGCGCGCCTTCCGACTGCAAGCCTCGCTGCATCGACACGCGAGGGTTCATACAGCGGCCACACCATACGAGTGCACAATGTGTGGAAAGAAATTCAAATATTCCACCAGTGTTAACTTACATGTGCGCACTGTTCATTACAAATTACCGCATCCACCTAGGAAGAAGCGAAGCCGAGCAAGAAATTTTAGTTCTGATGCTACTAATGAAAATACTATTTAA
- Protein Sequence
- MVCYCCVKGCKNNTNLKKKDPNYTVSFHAFPTNTELRIKWLRAIGRPTWEPPNHARICSAHFSYDQISHESCRTRIKEDACPVNALPLNSNFEASDLEVCRICLATDVNMHSLQEGTLKSCMESIGGMNESYNIEGLPQFVCSECAAHFIRFYRLVEKSVIAQATLLDIFAQHGEITKSLIKRQDRKQLNLVSSLNYCKQTNIYNYNYENGTSCLVKSEYKDLSNFTCNIKLKEDYKGLLVKNNDHAQTESINLENIYPNHDKNEELISTFAEHDDKEKIVETNNGGHLEDFKINFTDDDSLWEDCHEEPVVKMRHKHKKKKILDDEITENKKVKTKNPNGLTPDEINMQDYFDIVKLSLQEQIDEWQKSMARRHFTSETTYRCDICSKVFAHINTYRMHSGSHDIRRGKAECPVCKLRFKNDVLVNSHRSRTHGKKFYCKSCPKVFNNVAVAKKHHRWHSGHVYTCGACPFASAHDSAVRAHARTAHAQRTAAAAAAACATCVTCGRACLSARGLLLHYATAHKHIQETEGNPAFLCEQCDISFTSEGARRVHILTSSQHKKKPNLYDTIPIDPSVKTTCSKCGVKFQSPKELIDHTRSEHRRSPQKKTSWSLPGDSYPTQCEHCEETVNNRKEHWWHVRKQHPKEKHTYQPVITAICETCGKGFQNSTKLHLHELRHASPRVPCSVCGRVFYDKYALARHATLHAAARPHACRACPRAFRLQASLHRHARVHTAATPYECTMCGKKFKYSTSVNLHVRTVHYKLPHPPRKKRSRARNFSSDATNENTI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00063661;
- 90% Identity
- iTF_01010424;
- 80% Identity
- iTF_01010424;