Mtil014598.1
Basic Information
- Insect
- Mimas tiliae
- Gene Symbol
- -
- Assembly
- GCA_905332985.1
- Location
- HG995266.1:3035229-3043184[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.17 12 7.0 1.5 1 23 276 299 276 299 0.97 2 10 0.0024 0.16 12.8 0.9 3 23 308 328 307 328 0.98 3 10 0.0047 0.33 11.9 0.2 3 23 365 386 363 386 0.95 4 10 4.5e-05 0.0031 18.3 3.5 3 23 390 411 388 411 0.96 5 10 3.7e-06 0.00026 21.7 2.3 1 23 417 439 417 439 0.98 6 10 0.55 38 5.4 0.6 2 21 449 468 449 473 0.91 7 10 9.8e-05 0.0068 17.2 3.3 1 23 478 501 478 501 0.94 8 10 0.0013 0.089 13.7 1.3 1 23 507 530 507 530 0.98 9 10 8.5e-06 0.00058 20.5 1.2 1 23 538 560 538 560 0.97 10 10 0.00046 0.032 15.1 0.1 1 23 566 589 566 589 0.96
Sequence Information
- Coding Sequence
- ATGGCTTCACAACAAAATATATGCACAACATGTTTATGTACCGATCGAAGTCTAACACCTCTGTCGAAAATATCATTAATATTACAAGAAATTAACTTACATCAGCCAAACGAGCCTGGTTTTATTTGTTGGGAATGCTCGACCATTATAATGAAGTTTTACAACTTCAAGATCCGTTGTAAACAAGCTGAGACTTCTTTGAACATTCATAGAAAGAAACTAGGACCTTTATCAACACTTGGAAAAACAACAAAAACATTCTGTGATTATCATTTTAACTACAATGATCCCCTCACTGACTCAGATTTAGATTACAAAACTGAAATAAATGATATAAAATATGAACCAGAGAATGTAGACCTTAAAGACGAATCTAATATTTATGTAGAAAATATTCATCATATATGTAATGTCGATAAAACGGTTATAGATGTAAAAGTTATAGACAATAATACAAAACATATATCTAAAAGAAAAACAAGGAAACCTCATATTTCTGGCATAGACAAAGAAGAGACAATTACAGCAGATGTATCAGATATAGATAATGATATAGTTACAGAGCATATTAAAACAAATCATATATCAGACATAGAGAAAATAGAAATAGATGAAGCAGACATCGAAACAGAAGATTCAGATATAGAAATAACTGATATTAAAAGAAAAGAACAAAGAAAGATAAAGAAAAATGGGAATGGGAAATTAGATGACAAATCTCATGATGAAGTTATAGAGAAATTTGACTTTGTAGTTTTTACAGAGGAAGAGGTTATTAAAAACAGAGAAGATAAAAGAAAGAAACCCAATTATAAGAAAATACCGTTTAAATGTGACTCTTGTGTGCTGGGTTTTACAAAGGAGGCATTTTATACACAACATGTAAAAAAGAAACATGATGAGAGTATAGGCAGCTCTCTCTGTCCAGTTTGCAGCACGCGATTCTCAACTCTACGAGCGATGGAGCGACACAAGAGCAAGCATTATACATGTTATCGGTGCAGACTGTGCAAGTACGACACACTGGAACTGTGGTCGGCGTTGAATCACTGTCGTTTGAAACATGCACACGACAGTCACAACAATATACACTGCGCGCAGTGCCCACAAGTGTGCAGAACGGCTGAAGCTTTAGCTGAACATGTAAGGGTTGAACACACCCTGTTCTGTAAAGAATGTGGTATGACATTTAAAGGCAAGCACTCACTAAGGAGCCATAGAAGACGAATACATGCAGAAATAAGAGATTTTCAATGTGACCTGTGTAATAAAACATTTACTAAGAAATCTCGTCTCGAATCGCACATGGTCAGGCACAATGACAGCATTGCCAAGAAACTGGCTTATTGCACCATATGTGATGTACAGTACAAGAACCTTTACATATATAGAAATCATTTGAGAAATAGCACAAACCATTCCGAGAGATTATACCCATGCCCCGAGTGTGACAAAAAATTCTCGTCAAAATATTATCGAAAGCAACACTACAATTTTTATCATCTGCAAAAATCGTCGTATCAATGTGATATTTGCAATAAGCTATTCATATCCGACTGGCGTTTGAAGAACCACAAGCAAACAAAACATGGTATGAATCGGCCACGAGATCATCCATGCAATGTGTGCGGGAAGAAATTCTTCACCCTGCCGACATTGCGCGCGCACCAGTTAACCCACTCTGAGCAGCGCACGTACATGTGCGAGGACTGTGGAGACACATTCAGACAACGGCCAGCGCTCTACAACCACGCGAGACTTGTTCACAAGAGTGTCAAGCGCAAATAG
- Protein Sequence
- MASQQNICTTCLCTDRSLTPLSKISLILQEINLHQPNEPGFICWECSTIIMKFYNFKIRCKQAETSLNIHRKKLGPLSTLGKTTKTFCDYHFNYNDPLTDSDLDYKTEINDIKYEPENVDLKDESNIYVENIHHICNVDKTVIDVKVIDNNTKHISKRKTRKPHISGIDKEETITADVSDIDNDIVTEHIKTNHISDIEKIEIDEADIETEDSDIEITDIKRKEQRKIKKNGNGKLDDKSHDEVIEKFDFVVFTEEEVIKNREDKRKKPNYKKIPFKCDSCVLGFTKEAFYTQHVKKKHDESIGSSLCPVCSTRFSTLRAMERHKSKHYTCYRCRLCKYDTLELWSALNHCRLKHAHDSHNNIHCAQCPQVCRTAEALAEHVRVEHTLFCKECGMTFKGKHSLRSHRRRIHAEIRDFQCDLCNKTFTKKSRLESHMVRHNDSIAKKLAYCTICDVQYKNLYIYRNHLRNSTNHSERLYPCPECDKKFSSKYYRKQHYNFYHLQKSSYQCDICNKLFISDWRLKNHKQTKHGMNRPRDHPCNVCGKKFFTLPTLRAHQLTHSEQRTYMCEDCGDTFRQRPALYNHARLVHKSVKRK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -