Mtil014671.1
Basic Information
- Insect
- Mimas tiliae
- Gene Symbol
- -
- Assembly
- GCA_905332985.1
- Location
- HG995266.1:4095468-4113365[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 8.3 5.7e+02 1.7 0.1 1 12 262 273 262 275 0.88 2 10 0.26 18 6.4 5.9 1 23 487 509 487 509 0.99 3 10 6.6e-05 0.0045 17.7 0.8 1 23 516 538 516 538 0.98 4 10 0.0001 0.0069 17.2 0.7 2 23 569 591 568 591 0.96 5 10 2.7e-06 0.00019 22.1 0.1 1 23 600 622 600 622 0.98 6 10 0.0014 0.096 13.6 0.6 1 23 627 649 627 649 0.98 7 10 0.00049 0.034 15.0 0.4 1 21 656 676 656 681 0.94 8 10 5.5e-05 0.0038 18.0 0.6 2 23 687 709 686 709 0.96 9 10 0.00068 0.047 14.6 0.7 1 23 715 737 715 737 0.96 10 10 0.0021 0.14 13.0 3.1 1 21 749 769 749 770 0.93
Sequence Information
- Coding Sequence
- ATGACGGAAACGGATATGCTATCTCAATATAAAGCTTCCAGTGAGATTAATTTAGAAGATTGCCTAGTGTGCTGCCTATGTCATGGAATATTAAAGAGAATTGATATATTTATTCAACAAGTACAGAAGAGCAACGCCATTTTAAATGAGAAGGGCCCTCAAGCAGAAAAGTTTGAACACTACCAGTATGCACAAGTGGCGGTACTGTCTGTCGAGCCTGACATCACTATGTTACCACCCGAGCATAGCGTCACTATGTTACCACCCGAGCCAGACATTAATATGTTACCACCCGAACCAGAAATAGACATGTTACCACCTGAGCCAGAAATCGACATGTTACCACCCGAGCCAGAAATCGACATGTTACCACCCGAGCCAGAAATCGACATGTTACCACCCGAGCCAGAAATCGACATGTTACCACCCGAGGCAGAAATCGACATGTTACCACCCGAACCAGACATCCACTTGTTGCCACCTGAACCGGAGCGTCAATACGAAGAAATACCACCAAATGAAGTAATTTTGTTGGACGGACTGCCTTTAGATCACACTGGTGTGTTGGACTTCGATGGGCCTGAGTTACAGAATTATGACCTAAATGCAGAATTTGCCATAGACCCTCAGACAAATTTAGCGTCTATGGAAGAGGATGCATTGGCGACCACGCAAATAGACGAAAACCTTATAGCTACCTCAAATAAATGTATAAAGTGTCAAATATTGTACGATGAAATCACACTCAGCGATTTGGAAAGGCATAGTCAGCTGCCCAGCAGTTATGTATGTTCAAGTTGCAATTTGGAATTTAATAGTCACTTGTCGCCGGAAGATGAGATTTTATCGCCGGAAGATGAGATTCTACAATATGCTAGTGATGCGACAGATTTACAAAGAAATCCAATAGAATTTCACTCAATATGCCCACAGGAAAATTGTGGTCAAGTTGACAACAACAATTATGTTATCGAACAAGATCAATACAATAATGGCTACAGTGAATACGATAGAAGCGAATATGACGATTATTTTGAAATTGGTACAGAATTTGTAAACAAAGATAGCGCCAATCTTATGAATATAACAAATAATAATATAGTTTACAATGAAATAACTTATACTGATATGGCTGATAATGATGTAACTGATAATGATGTTACTGATAATGATGCAACTGATAATGATGTAGTAACTAATAACGATATAACTAATAACGTTGTATCTAATAACGATATAACAAACAATGATATTTCTGATGATGATATAACTGATAATGATATAACTAATAACGATAATGAATGTACTGTAAAAGAAAAAGAACCCAAAGCTATCCCAGAAAAGAAAAAGAAAAGGAGAATAAAACGCAATGGATTTAAAAAGGTAAAGCTCTCTATAGAAGAACAAAAGGCAGAATTAGAAACGAAAAGAAAACAAAAGAAGTATTTAGATGCTGAATTTAAATGTCATCATTGTGCGTTAGGTTTTTTGTTCAAGGATACATATCAAACGCATATGATGAGGCATGAAGAGTCCAACGGTGAATTCAAATGTCCTACCTGCACGTTGCGATTTGCATCTCTGTCGGTACTGCGATCCCACATGAAACTGCACACATACCGTACGGAGTGCAGGCGATGTGGCGCTCGTCCTTCACACAGACTCACACGACACCACGCCGCCATGTGTCGCGGGAATGTGATAACATGTCCTCTGTGTACACGGACGTTTAGATATGCCACTGGGCTAAAACAGCACGTGAAAAGGTATCATCAGACAAAGACGTCTGTGCGCAGTTACCCGTGCCCCGTTTGTGGCAAGATTTACAACAATCAAAGTGCTGTTAGGTCTCATATGATAAAACACCTAAATAAAAAGTTTCCATGCGACCGATGTTCTTCTGCGTTCAATAGCCCGTACACGCTGAATCAGCATAAAAAGATACACGACCGTGAAACAGAGCAATATTACTGTGATGAATGCAACCTCCCATACAAAACTAAAAAAAGCTTGTTGGCGCACAAACGGAACGCGCTTGTACATCAGCAGTCATTCGTGGAATGCCCTATATGCAAGCGCATGTGTCCGACCCAACGTTCTCTGTCGGCACATATGTCTACAGTACACACTGAGAGGAAGGATCACGTGTGCCCCACATGCGACGCTCGGTACTCGAGTGTCAAGTCACTCAAGAGGCACGCGGTGACTCACACCGATGTCGTGAAGAAAGTTGTGCAGCCTACCCACGCTTGTCACCGGTGCCCTAGCATGTTCAAGACTCGAAGCAAGCTGAATCGCCACTTAAAACAAGTTTGCGAGAAGAAAAGAATAGAAGAACTTTCATGTTATTATGGACAAGAGGGTGTTTAA
- Protein Sequence
- MTETDMLSQYKASSEINLEDCLVCCLCHGILKRIDIFIQQVQKSNAILNEKGPQAEKFEHYQYAQVAVLSVEPDITMLPPEHSVTMLPPEPDINMLPPEPEIDMLPPEPEIDMLPPEPEIDMLPPEPEIDMLPPEPEIDMLPPEAEIDMLPPEPDIHLLPPEPERQYEEIPPNEVILLDGLPLDHTGVLDFDGPELQNYDLNAEFAIDPQTNLASMEEDALATTQIDENLIATSNKCIKCQILYDEITLSDLERHSQLPSSYVCSSCNLEFNSHLSPEDEILSPEDEILQYASDATDLQRNPIEFHSICPQENCGQVDNNNYVIEQDQYNNGYSEYDRSEYDDYFEIGTEFVNKDSANLMNITNNNIVYNEITYTDMADNDVTDNDVTDNDATDNDVVTNNDITNNVVSNNDITNNDISDDDITDNDITNNDNECTVKEKEPKAIPEKKKKRRIKRNGFKKVKLSIEEQKAELETKRKQKKYLDAEFKCHHCALGFLFKDTYQTHMMRHEESNGEFKCPTCTLRFASLSVLRSHMKLHTYRTECRRCGARPSHRLTRHHAAMCRGNVITCPLCTRTFRYATGLKQHVKRYHQTKTSVRSYPCPVCGKIYNNQSAVRSHMIKHLNKKFPCDRCSSAFNSPYTLNQHKKIHDRETEQYYCDECNLPYKTKKSLLAHKRNALVHQQSFVECPICKRMCPTQRSLSAHMSTVHTERKDHVCPTCDARYSSVKSLKRHAVTHTDVVKKVVQPTHACHRCPSMFKTRSKLNRHLKQVCEKKRIEELSCYYGQEGV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -